BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G47690.1

Length=663
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935757 jgi|Araly1|935757|scaffold_403745.1                        492    2e-138


> Ahg935757 jgi|Araly1|935757|scaffold_403745.1
Length=299

 Score =  492 bits (266),  Expect = 2e-138
 Identities = 289/300 (96%), Gaps = 2/300 (1%)
 Strand=Plus/Plus

Query  79   GTTCTTCCGATTTGGGTTGGAGAGGAAATGGCGTCGGGATGGGGAATAACGGGAAACAAA  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GTTCTTCCGATTTGGGTTGGAGAGGAAATGGCGTCGGGATGGGGAATAACGGGAAACAAA  60

Query  139  GGGAGATGCTACGATTTCTGGATGGATTTCAGTGAATGTATGTCTCACTGCAGAGAGCCC  198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGGAGATGCTACGATTTCTGGATGGATTTCAGTGAATGTATGTCTCACTGCAGAGAGCCC  120

Query  199  AAAGATTGTACCCTTCTTCGTGAAGATTACCTCGAGTGTCTCCACCATTCCAAAGAGTTT  258
            ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AAAGATTGTACTCTCCTTCGTGAAGATTACCTCGAGTGTCTCCACCATTCCAAAGAGTTT  180

Query  259  CAAAGAAGGAACAGGATATACAAGGAGGAGCAGCGTAAACTAAGAGCAGCTTCGAGGAAA  318
            |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct  181  CAAAGAAGGAACAGGATATACAAGGAGGAGCAGCGTAAACTACGAGCAGCTTCAAGGAAA  240

Query  319  GGTGAAGAAGCCG-GAGATGGGACTCACAACCATCACTAGTCTCAACAATCCTCCTTCAA  377
            |||||||||| || | ||||||||||| | |||||||||||||||||| ||||||| |||
Sbjct  241  GGTGAAGAAGGCGTG-GATGGGACTCATACCCATCACTAGTCTCAACAGTCCTCCTCCAA  299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24322421046


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5