BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47700.1
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483953 jgi|Araly1|483953|fgenesh2_kg.4__3013__AT2G47700.1 2045 0.0
> Ahg483953 jgi|Araly1|483953|fgenesh2_kg.4__3013__AT2G47700.1
Length=1465
Score = 2045 bits (1107), Expect = 0.0
Identities = 1363/1478 (92%), Gaps = 51/1478 (3%)
Strand=Plus/Plus
Query 33 gagagagagagagGAAGAGGAAGGATAGATTTACCGCATCGGCGTTCCAAAAGGCAGACG 92
|||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 23 GAGAGAGAGAGA-GTAGAGGAAGGATAGATTTACCGCATCGGTGTTCCAAAAGGCAGACG 81
Query 93 AACTCGGAGAG--AC------AGATAGCGATAGCGAGACATGGTTTCTCATTGAtttttg 144
|| |||||||| || ||||||||||||||||| ||| ||| |||||||||||||
Sbjct 82 AAATCGGAGAGAAACAAAGAGAGATAGCGATAGCGAGAGATGATTTTTCATTGATTTTTG 141
Query 145 tttgacaatcctttcttttctttttttttGTTCTTTCGAAAAACGAAAAT--TTTCGTTG 202
|||||||| ||| | |||||||||||||||| | ||||||||||| ||||| ||
Sbjct 142 TTTGACAA----TTC---TGTTTTTTTTTGTTCTTTTG-AAAACGAAAATAATTTCG-TG 192
Query 203 G-TTCCCTCCGATTTGGCCTGCTGGTGAAGATATGGCCGGAGCTAAAGATTCGGGTTGCG 261
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 193 GCTTCCCTCCGATTTGGCCTGCTGGTGAAGATATGGCCGGAGCTAAAGATTCTGGTTGCG 252
Query 262 ATGATGATCTCCGAATTGCTGGTGGATGTGACCCTGGAAAACGCGGGAACCCGGAGGATT 321
||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 253 ATGATCATCGCCGAATTGCTGGTGGATGTGGCCCTGGAAAACGCGGGAACCAGGAGGATG 312
Query 322 CCTCGTCTCCTGTCGAAGTCTCGTGCTCGATTTGCCTCGAATCGGTGCTCGATGATGGTA 381
||||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||||
Sbjct 313 CCTCGTCTCCTGTCGAAGTATCATGCTCGATTTGCCTCGAATTGGTGGTCGATGATGGTA 372
Query 382 CCAGATCCAAGGCTAAGCTCCAATGTGGTCACCAGTTCCATTTGGATTGCATTGGATCAG 441
|||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||| |
Sbjct 373 CCAGATCCAAAGCTAAGCTCCAATGTGGCCACGAATTCCATTTGGATTGCATTGGATCGG 432
Query 442 CATTTAACATGAAAGGAGCCATGCAATGCCCTAACTGTCGCAATGTCGAAAAGGGTCAGT 501
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 433 CTTTTAACATGAAAGGAGCCATGCAATGCCCTAACTGTCGGAATGTCGAAAAGGGTCAGT 492
Query 502 GGTTGTATGCAAACGGTTCTACTCGCCCCTTTCCAGAGTTTTCCATGGAAGATTGGATCC 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GGTTGTATGCAAACGGTTCTACTCGCCCCTTTCCAGAGTTTTCCATGGAAGATTGGATCC 552
Query 562 CTGAAGAAGACTTGTACGGTTTAAGCT-ATCCGGAAATGCAATATCGGGTCCATTGGTGC 620
|||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||||
Sbjct 553 CTGAAGAAGACTTGTATGCTTTAA-CTTATCCGGAAATGCAATATCGGGTCCATTGGTGC 611
Query 621 CCGTTTGGTGAACTCTCTCAAGCAGCAGCT-TCTTTCGAGG-AACTGGAACCTGCAACCA 678
|||||||||||||||||||||||||| | | | |||| ||| ||||||||||||||||||
Sbjct 612 CCGTTTGGTGAACTCTCTCAAGCAGCTG-TGTGTTTC-AGGGAACTGGAACCTGCAACCA 669
Query 679 CTACATATCATA-CTGAGTTCCATGGACATCACGCCGCTGCTGTGAATCATTCGTATCTT 737
|||||||||||| | |||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 670 CTACATATCATAAC-GAGTTCCATGGACACCACGCCGTTGCTGTGAATCATTCGTATCTT 728
Query 738 GCATATGTTGGACCTGGCCCAGCCGCTACCCCGAGAACTAGCGACAATAACAGCACAGAT 797
|||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 729 GCATATGTTGGACCGGGCCCAACTGCTACCCCGAGAACTAGCGACAACAACAGCACAGAT 788
Query 798 GATCATCCCTGGAACAGCCACTCTAACGATCACTTTCACCAGCTTCCTGTTGCCCCCCAG 857
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 789 GATCATCCCTGGAACAGCCACTCTAACGATCACTTTCACCAGCTTGCTGTTGCCCCCCAG 848
Query 858 TATCATCACCATTCCCCATCGTTTTCACTACCCGCTGCTCATGTGGTTGATGGTGAAGTT 917
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 849 TATCATCATCATTCCCCATCGTTTTCACTACCCGGTGCTCATGTGGTTGATGGTGAAATT 908
Query 918 GACTCTTCAGCAGCACGAGGCCTACCTTATGCGCATCCATTTCTTTTTAGTCACCGGTCT 977
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 909 GACTCTTCAGCAGCACGAGGCCTACCTTATGCGCACCCATTTCTTTTTAGTAACCGGTCT 968
Query 978 AATCAAAGGTCCTCACCAGCAATTAACAGTTACCAAGGAAGCAGCACCCAAATGCGTGAA 1037
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 AATCAAAGGACCTCACCAGCAATTAACAGTTACCAAGGAAGCAGCACCCAAATGCGTGAA 1028
Query 1038 CAGCATCATGCTTATAATCATCAGAGGCAACAACATCATGCCAATGGTCCCACTCTCGCA 1097
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1029 CACCATCATGCTTATAATCATCAGAGGCAACA---TCATGCCAATGGTCCCACTCTCGCA 1085
Query 1098 TCACCTCTCATCTCCATGACAAGAAGGGGATTACCGCCGCCGCCACCTCCCCCACCAATG 1157
||||||||||||||||||||||||| |||||||| ||||| ||| | | ||
Sbjct 1086 CCACCTCTCATCTCCATGACAAGAAGAGGATTACCACCGCC---ACC------A--A-TG 1133
Query 1158 CCAGATCAGAACGTTGGATTCTTCATTTATCCAGGTGGACACCATGAACCAGAAACCGAT 1217
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 1134 CCAGATCAGAACGTTGGATTCTTCCTTTATCCAAGTGGACACCATGAACCAGAAACAGAT 1193
Query 1218 CAAATTCATGCATGGGAGAGAGATTGG-TTCCCACATTTCCCTGTCCCATCGAATCATCG 1276
||||||||||| |||||||| |||||| |||| |||||||||||||| |||||||| ||
Sbjct 1194 CAAATTCATGCTTGGGAGAGGGATTGGCTTCCG-CATTTCCCTGTCCCGTCGAATCACCG 1252
Query 1277 CACGATCCCTAGCTTGTGGCATAGACACTTCTGAGAGAAGTTGTGTCAGAACTCTACAGT 1336
||||||| ||||||||||||| |||||||||||||| ||||||||| | ||||| |||
Sbjct 1253 CACGATCTCTAGCTTGTGGCACAGACACTTCTGAGAAAAGTTGTGT-A---CTCTAAAGT 1308
Query 1337 CGCCTGGGAGAATTCTATCAGGCTTAATGATCAATGTATAAAAGAAAACTGGGGACTTGT 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 CGCCTGGGAGAATTCTATCAGGCTTAATGATCAATGTATAAAAGAAAACTGGGGACTTGT 1368
Query 1397 TTGATCGATCAAAACTTGTTTATGATGTAACTATAACTGGTTTCCAATGTACATTGTGAG 1456
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 TTGATCGTTCAAA-CTTGTTTATGATGTAACTATAACTGGTTTCCAATGTACATTGTGAG 1427
Query 1457 CTTTCCAAGAACAATTGTTATAATTAATTAAACACAAG 1494
||||| |||||| ||||||||||| |||||||| |||
Sbjct 1428 CTTTCTAAGAACCGTTGTTATAATTGATTAAACAGAAG 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56221201620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5