BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47710.1
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935759 jgi|Araly1|935759|scaffold_403747.1 841 0.0
> Ahg935759 jgi|Araly1|935759|scaffold_403747.1
Length=533
Score = 841 bits (455), Expect = 0.0
Identities = 510/536 (95%), Gaps = 6/536 (1%)
Strand=Plus/Plus
Query 87 CGCCGGCGAACAACGT-CA-GAGTCATGGCCACCGGAGATGGGAAATCGGTGATGGTCGT 144
||||||||||| | || | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 CGCCGGCGAAC-A-GTGAAGGAGTCATGGCCACCGGAGATGAGAAATCGGTGATGGTCGT 58
Query 145 CGGAGTTGACGACAGCGAGCAGAGCACTTACGCCTTGGAGTGGACGCTCGATCGTTTCTT 204
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 59 CGGAGTCGACGACAGCGAGCAGAGCACTTACGCCTTGGAGTGGACCCTCGATCGCTTCTT 118
Query 205 CGCTCCTTACGCTCCCAATTATCCTTTTAAGCTCTTCATCGTCCACGCCAAACCTAACGC 264
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 CGCTCCTTACGCTCCCAATTATCCGTTTAAGCTCTTCATCGTCCACGCCAAACCTAACGC 178
Query 265 CGTCTCCGCCGTTGGTCTCGCTGGTCCCGGAACTGCGGAGGTTGTACCTTATGTTGATGC 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CGTCTCCGCCGTTGGTCTCGCTGGTCCCGGAACTGCGGAGGTTGTACCTTATGTTGATGC 238
Query 325 TGATCTGAAGCATACCGCTGCTAAGGTTGTCGAGAAAGCCAAAGCAATTTGTCAGAGCAG 384
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGATCTGAAGCGTACCGCTGCTAAGGTTGTCGAGAAAGCCAAAGCAATTTGTCAGAGCAA 298
Query 385 ATCGGTTCATGGCGCGGTGATCGAAGTTTTCGAAGGTGATGCAAGGAATATCCTATGTGA 444
|||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 299 ATCGGTTCATGGTGCGGTGGTCGAAGTTTTTGAAGGTGATGCAAGGAATATCCTATGTGA 358
Query 445 AGTTGTAGATAAGCATCATGCTTCTATTCTTGTTGTGGGAAGCCATGGATATGGAGCTAT 504
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGTTGTAGATAAGCACCATGCTTCTATTCTTGTTGTGGGAAGCCATGGATATGGAGCTAT 418
Query 505 CAAGAGGGCGGTTCTCGGGAGTACGAGTGACTACTGCGCTCATCATGCTCATTGCTCGGT 564
||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||
Sbjct 419 CAAGAGGGCGGTTCTCGGGAGCACGAGCGACTACTGCGCCCATCACGCTCATTGTTCGGT 478
Query 565 GATGATCGTGAAGAAGCCTAAGATCAAGGTCTGAAACC-TAAGGGAAGGCTACTCG 619
||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 479 CATGATCGTGAAGAAGCCTAAGATCAAGGTCTGAAACCCTAAGCAAAG-CTACTCG 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29888366928
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5