BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47730.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346572 jgi|Araly1|346572|fgenesh1_pg.C_scaffold_4002914 1009 0.0
Ahg902826 jgi|Araly1|902826|Al_scaffold_0004_3476 407 2e-112
> Ahg346572 jgi|Araly1|346572|fgenesh1_pg.C_scaffold_4002914
Length=648
Score = 1009 bits (546), Expect = 0.0
Identities = 617/651 (95%), Gaps = 6/651 (1%)
Strand=Plus/Plus
Query 890 ATGGCCAGTATCAAGGTTCACGGAGTTCCCATGTCCACCGCCACAATGCGCGTCCTCGCT 949
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCCACTATCAAGGTTCACGGAGTTCCCATGTCCACCGCCACCATGCGCGTCCTCGCT 60
Query 950 ACTCTTTACGAGAAAGATCTCCAGTTCGAGCTCATCCCCGTCGATATGAGAGCCGGTGCC 1009
|||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GCTCTCTACGAGAAGGATCTCCAGTTCGAGCTTATCCCCGTCGATATGAGAGCCGGTGCC 120
Query 1010 CACAAGCAAGAGGCCC-ACCTTGCCCTCAACCCCTTCGGTCAAATTCCTGCTCTCGAGGA 1068
||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CACAAGCAAGA-GCCCTACCTTTCCCTCAACCCCTTCGGTCAAATTCCTGCTCTCGAGGA 179
Query 1069 CGGTGATTTGACGCTTTTCGAGTCAAGAGCCATCACACAGTACCTAGCAGAGGAATACAG 1128
||||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 180 CGGTGATCTGTCGCTTTTCGAGTCAAGAGCCATCACACAGTACATAGCTGAGGAATACAG 239
Query 1129 TGAGAAAGGTGAAAAGCTTATCT-CCCAAGACTGCAAGAAAGTC-AAGGCAACCACTAAC 1186
||||||||||||||||||| ||| ||| || ||||||||||| | ||||||||||| |||
Sbjct 240 TGAGAAAGGTGAAAAGCTTCTCTGCCC-AGGCTGCAAGAAAG-CGAAGGCAACCACCAAC 297
Query 1187 GTATGGCTTCAAGTTGAAGGTCAACAGTTTGACCCTAACGCCTCTAAGCTTGCCTTCGAG 1246
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTTTGGCTTCAAGTCGAAGGTCAACAGTTTGACCCTAACGCCTCTAAGCTTGCCTTCGAG 357
Query 1247 CGTGTCTTTAAAGGCATGTTCGGCATGACCACTGACCCTGCCGCTGTCCAAGAGCTCGAA 1306
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 CGTGTCTTTAAAGGCATGTTCGGTATGACCACTGACCCTGCCGCTGTCCAAGAGCTCGAA 417
Query 1307 GGTAAGCTCCAGAAAGTCTTGGATGTCTACGAGGCTAGGCTCGCCAAATCTGAGTTCTTG 1366
|||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct 418 GGTAAGCTCCAGAAAGTCTTGGATATCTACGAGGCTAGGCTCTCCAAATCTGACTTCTTG 477
Query 1367 GCTGGTGATTCCTTCACTCTTGCTGATCTTCACCACCTCCCAGCCATCCATTACTTGTTG 1426
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 GCTTGTGATTGCTTCACTCTTGCTGATCTTCACCACCTCCCAGCCATCCATTACTTGATG 537
Query 1427 GGTACTGACTCCAAGGTGCTCTTTGACTCTCGCCCTAAGGTTAGCGAGTGGATTAAGAAG 1486
|| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 538 GGCACTGACTCCAAGGCCCTCTTTGACTCTCGCCCTAAGGTTAGCGAGTGGGTTAAGAAG 597
Query 1487 ATCTCTGCCAGGCCTGCTTGGGCTAAGGTTATTGACCTCCAGAAGCAGTAG 1537
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATCACTGCCAGGCCTGCTTGGGCTAAGGTTATTGACCTCCAGAAGCAGTAG 648
> Ahg902826 jgi|Araly1|902826|Al_scaffold_0004_3476
Length=1242
Score = 407 bits (220), Expect = 2e-112
Identities = 262/281 (93%), Gaps = 7/281 (2%)
Strand=Plus/Plus
Query 364 AAAGGCACCTGATGCAATTCATGCTGCTTTATCACCGTCATCATCTCTATCATTACTCAG 423
||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 964 AAAGG-ACCTGATGCAACTCACGCTGCTTCATCACCGTCATCATCTCTATCATTACTCAG 1022
Query 424 AGGAGTGTTACCAAAGTATTTCAGCTCAGAGTTGTCAGTGGCTCAGTTCCGGTTGGTCGA 483
||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct 1023 AGGAGTGTTACCAAAGTATTTCAGCTCGGAGTGGTCAGTGGCTCAATTCCGGTTGGTTGA 1082
Query 484 AGGATCTTAATACATAGTGGCATTTGGACATGAGAAGAACACAG-----ATTCTTGGGAT 538
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1083 AGGATCTCAATACATAGTGGCATTTGGACATGAGAAGAACACAGTGGTGATTCTTGGGAT 1142
Query 539 GGATGGGAGCTTCTACAAAGGCCAGTTTTGATCCAGTACACGGAGGAGAGATGTCTCAGC 598
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1143 GGATGGGAGCTTCTACAAATGCCAGTTT-GATCCAGTGCACGGAGGAGAGATGTCTCAGC 1201
Query 599 TCGAGTATCATAACTGTCTGAAGCCGCCTTCTGTGTTTTGA 639
|||||||||| |||||||||||||||||||||||||| |||
Sbjct 1202 TCGAGTATCACAACTGTCTGAAGCCGCCTTCTGTGTTCTGA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5