BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47750.1
Length=2155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483956 jgi|Araly1|483956|fgenesh2_kg.4__3016__AT2G47750.1 3072 0.0
> Ahg483956 jgi|Araly1|483956|fgenesh2_kg.4__3016__AT2G47750.1
Length=2017
Score = 3072 bits (1663), Expect = 0.0
Identities = 1888/1995 (95%), Gaps = 22/1995 (1%)
Strand=Plus/Plus
Query 15 GAGCTTGCATAATTGATGATATCAGCACTGA----ttttttttCCCTTTAACTGATATAT 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1 GAGCTTGCATAATTGATGATATCAGCACTGATCTTTTTTTTTTCCCTTTAACTGATATGT 60
Query 71 TGCAAGGACAAAGTTAATCTCCATTTCTGGGTATGTAAATATGGCTAAACCCACTAT-AA 129
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TGCAAGGACAAAGTTAATATCCATTTCTGGGTATGTAAATATGGCTAAACCCACTATAAA 120
Query 130 ATATACCCCCTTACTTTGAGTCCTGAGGCAGTCATTACCtctcttcttcttcttcttctt 189
||| ||| |||| ||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct 121 ATACACCTCCTTCCTTTGAGTCCTGAGGCATTCATTACCTCTCCTCCTCTTCTTCTTCTT 180
Query 190 cttcttctttcttTGGGTT-AGCTGAGAAATGGATGTAATGAAGCTTGA-T-C-ACGAC- 244
||||||| |||||| || |||| | |||||||||||||||||||||| | | || ||
Sbjct 181 CTTCTTC-TTCTTTTTATTCAGCTAAAAAATGGATGTAATGAAGCTTGATTACAACTACA 239
Query 245 -A-GT-G---T--ATTAAAAGAGCTTGAGAGGATCACCTCGAAAGCTGCTGAAGTTCAAG 296
| || | | ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 AAGGTGGCAATGCATTAACAGAGCTCGAGAGGATCACCTCGAAAGCTGCTGAAGTTCAAG 299
Query 297 ATAACATTTTACGTGGGATCTTGGAAAGAAACAAGGACACAGAGTACTTGAGTAAGTACA 356
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 ATAACATTTTATGTGGGATCTTAGAAAGAAACAAGGACACAGAGTACTTGAGTAAGTACA 359
Query 357 TGAATGGCTCTAAGGATGTTCTGGAGTTTAAACGCGCTGTGCCAATCATCATATACAAAG 416
|||| |||||||| || ||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct 360 TGAAAGGCTCTAAAGACGTTGTGGAGTTTAAACGATCTGTGCCAATCATCACATACAAAG 419
Query 417 ATATCTATCCGTACATTCAGAGAATTGCTAATGGAGAAGACTCATCTCTTATTACTGGCC 476
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 420 ATATCTATCCGTACATTCAGAGAATTGCTAATGGAGAAGACTCTTCTCTCATTACTGGCC 479
Query 477 ATTCTATTACTGAAATATTATGCAGCTCTGGGACTTCTGCTGGAGAGCCAAAGCTAATGC 536
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATCCTATTACTGAAATATTATGCAGCTCTGGGACTTCTGCTGGAGAGCCAAAGCTAATGC 539
Query 537 CAACCATTCCTGAAGATCTTGATCGCCGCACTTTTCTCTACAATCTTATCATTCCAATCG 596
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 CAACCATTTCTGAAGATCTTGATCGCCGAACTTTTCTCTACAATCTTATCATTCCAATCG 599
Query 597 TGAACAAGTACATAACAGGACTTGACAAAGGAAAAGCAATGTACCTAAATTTCGTAAAGG 656
|||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 600 TGAACAAGTACATACCAGGACTTGACAAAGGCAAAGCAATGTACCTGAATTTCGTAAAGG 659
Query 657 CTGAAACATCAACTCCTTGTGGTTTACCAATCAGAGCTGTCCTCACTAGTTACTACAAAA 716
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
Sbjct 660 CTGAAACATCAACTCCTTGTGGTCTACCAATCAGAGCTGTCCTCACTAGTTACTATAAGA 719
Query 717 GCAAGCATTTCCAGTGCAGACCTTATGATCCATTCAACGACTTAACCAGTCCTATCCAAA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCAAGCATTTCCAGTGCAGACCTTATGATCCATTCAACGACTTAACCAGTCCTATCCAAA 779
Query 777 CCATCCTTTGTGAAGACAGCAACCAAAGCATGTACTGTCAGTTACTAGCCGGTCTGATTC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCATCCTTTGTGAAGACAGCAACCAAAGCATGTACTGTCAGTTACTAGCCGGTCTGATTC 839
Query 837 ACCGTCACAAGGTGATGCGTTTAGGAGCAGTCTTTGCTTCAGCGTTTCTCCGTGCAATCT 896
|||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 840 ACCGCCACAAAGTGATGCGTTTAGGAGCTGTCTTTGCTTCGGCGTTTCTCCGTGCAATCT 899
Query 897 CTTATCTCGAGAAGAAATGGAGTCAGCTCTGTGAAGACATCCGCACCGGTAGTCTCAACC 956
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 900 CTTACCTCGAGAAGAAATGGAGTCAGCTCTGTGAAGACATCCGCACCGGTCGTCTCAACC 959
Query 957 CCATGATCACCGATCCAGGTTGCCAAATGGCAATGTCTTGTCTTTTAATGTCGCC-GAAT 1015
||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||| || |
Sbjct 960 CCATGATCACCGATCCAGGGTGCCAAATCGCAATGTCTTGTCTTCTAACGTCGCCCGA-T 1018
Query 1016 CCAGAGTTAGCTAGCGAGATCGAAGAGATCTGTGGGCGGTCGTCGTGGAAAGGGATTCTG 1075
|||||||||||||||||| ||||| |||| ||| | ||||||||||||||||||||||||
Sbjct 1019 CCAGAGTTAGCTAGCGAGCTCGAAAAGATTTGTAGTCGGTCGTCGTGGAAAGGGATTCTG 1078
Query 1076 TGTCAGCTCTGGCCTAAGGCAAAGTTCATCGAAGCAGTAGTGACGGGCTCAATGGCTCAA 1135
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TGTCATCTCTGGCCTAAAGCAAAGTTCATCGAAGCAGTAGTGACGGGCTCAATGGCTCAA 1138
Query 1136 TACATACCTGCACTTGAGTTTTTTAGCCAGGGGAAGATTCCATTGGTTTGTCCAATGTAT 1195
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1139 TACATACCAGCACTTGAGTTCTTTAGCCAAGGGAAGATTCCATTGGTTTGTCCAATGTAT 1198
Query 1196 GCTTCCTCTGAGACTTACTTTGGAGTCAACGTGGAACCACTCTCCAAACCATCTGACGTC 1255
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1199 GCCTCCTCTGAGACTTACTTTGGAGTCAACGTGGAGCCACTCTCCAAACCATCCGACGTC 1258
Query 1256 GTTTTCACTCTCTTGCCTAACATGTGCTACTTCGAGTTTATCCCTCTCGGCAAAAACGGG 1315
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1259 GTTTTCACTCTTTTGCCTAACATGTGCTACTTCGAGTTTATCCCTCTCGGCAAAAATGGG 1318
Query 1316 ACACTCTCTTTTGATCTAGACGACGATGAACAAGTCCCCTGTGATAAAGTCGTTGACTTG 1375
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1319 ACACTCTCTTTTGATCTAGACGATGATGAACAAGTCCCGTGTGATAAAGTCGTTGATTTG 1378
Query 1376 GTCAATGTCAAACTCGGCCGCTACTATGAACTGGTCGTCACAACTTTCGCAGGATTGTAC 1435
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GTCAATGTCAAACTCGGTCGCTACTATGAACTGGTCGTCACAACTTTCGCAGGATTGTAC 1438
Query 1436 CGTTACCGAATCGGCGACGTTCTTCAAGTGGCGGGTTTCTACAACGGAGCACCACAGTTC 1495
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1439 CGATACCGAATCGGCGACGTTCTTCAAGTGGCGGGTTTCTACAACGAAGCACCACAGTTC 1498
Query 1496 CGGTTTATCTGCAGGAGAAACGTGGTTCTAAGCATCGACTTAGACAAAACCAACGAAGAA 1555
||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1499 CGGTTCATCTGCCGGAGAAACGTAGTTCTAAGCATCGACTTAGACAAAACCAACGAAGAA 1558
Query 1556 GATCTACACAGGAGCATAACGTTAGCCAAGAAGAAGCTTGGAAGCAACGCATTCCTGGCG 1615
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GATCTGCACAGGAGCATAACGTTAGCCAAGAAGAAGCTTGGAAGCAACGCATTCCTGGCG 1618
Query 1616 GAGTACACGAGCTACGCGGACACGTCATCAGTGCCAGGTCACTACGTGCTATTCTGGGAG 1675
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1619 GAGTACACGAGCTACGCGGACACGTCATCAGTGCCAGGCCACTACGTGCTATTCTGGGAG 1678
Query 1676 ATCCAAGGTCATCTCGAGCCGAAACTGATGGAAGAGTGTTGCGTTGCGGTGGAGGAAGAG 1735
|||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 1679 ATCCAAGGTCATCTGGAGCCGAAGCTGATGGAAGGGTGTTGCGTTGCGGTCGAGGAAGAG 1738
Query 1736 CTGGACTACATATACAGACAGTGCAGGACGAAAGAGAGATCGATAGGGGCATTAGAGATC 1795
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1739 CTGGATTACATATACAGACAATGCAGGACGAAAGAGAGATCGATAGGGGCGTTAGAGATC 1798
Query 1796 AGAGTGGTGAAACCAGGAACGTTCGAGAAACTGATGGATCTGATTATAAGCCAAGGAGGG 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1799 AGAGTGGTGAAACCAGGAACGTTCGAGAAACTGATGGATCTGATTATAAGCCAGGGAGGG 1858
Query 1856 TCGTTTAATCAGTATAAAACGCCGAGATGTGTCAAGTCCAACAGTGCAACGTTCAAGCTC 1915
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1859 TCGTTTAATCAGTATAAAACGCCCAGATGTGTTAAGTCCAACAGTGCAACGTTCAAGCTC 1918
Query 1916 TTGAACGGACACGTAATGGCTTCTTTCTTTAGCCCTCGTGACCCGACTTGGGTTCCATGA 1975
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 1919 TTGAACGGACACGTAACGGCTTCTTTCTTTAGCCCTCGTGACCCGACTTGGGTCCCGTGA 1978
Query 1976 TCC-CAAGACTTTTA 1989
||| |||||||||||
Sbjct 1979 TCCTCAAGACTTTTA 1993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81094131605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5