BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47760.1
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935763 jgi|Araly1|935763|scaffold_403751.1 2134 0.0
> Ahg935763 jgi|Araly1|935763|scaffold_403751.1
Length=1360
Score = 2134 bits (1155), Expect = 0.0
Identities = 1294/1362 (95%), Gaps = 5/1362 (0%)
Strand=Plus/Plus
Query 26 TGCGATTTGCTCTGTTTTCATGGCGGGCGCCTCATCACCGGCGAGTTTGAGAGCTTCTCG 85
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TGCGATTAGCTCTGTTTTCATGGCGGGCGCCTCATCACCGGCGAGTTTGAGAGCTTCTCG 61
Query 86 TAGCCGTCGGCTGGGGAAGGAGACGAATCGAT-CCGATCTATTCAAAAAACCTGCAGTTC 144
|| ||||| ||| ||||||||||||| || | |||||||||| ||||| ||| | |||
Sbjct 62 TAACCGTCAGCTCGGGAAGGAGACGATTC-TTCCCGATCTATTGAAAAACCCTAAACTTC 120
Query 145 CATTCGCATTCGCGCTAATTCTTGCTGATGCAATCCTAGTCGCACTTATTATCGCCTATG 204
||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 121 CATTCGCATTCGCTCTAATTCTTGCTGATGCAATCCTCGTCGGACTTATTATCGCCTATG 180
Query 205 TTCCATACACGAAGATCGATTGGGATGCTTACATGTCACAGGTTAGTGGGTTTCTCGGGG 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 TTCCATACACGAAGATCGATTGGGATGCTTACATGTCACAGGTTAGTGGGTTTCTAGGGG 240
Query 265 GAGAGAGAGACTATGGGAACTTGAAAGGCGATACAGGGCCATTGGTTTATCCAGCAGGTT 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 GAGAGAGAGACTATGGGAACTTGAAAGGCGATACAGGGCCATTGGTTTATCCAGCGGGTT 300
Query 325 TCCTCTATGTTTACTCTGCAGTGCAGAACTTAACTGGAGGGGAAGTCTACCCTGCTCAGA 384
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TCCTCTATCTTTACTCTGCAGTGCAGAACTTAACTGGAGGGCAAGTCTACCCTGCTCAGA 360
Query 385 TTCTTTTTGGTGTTCTCTACATTGTCAATCTGGGGATCGTCTTGATCATCTACGTGAAGA 444
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 361 TTCTTTTTGGTGTTCTCTACATTGTCAATCTGGGGATCGTCTTGTTCATCTATGTGAAGA 420
Query 445 CTGATGTGGTGCCATGGTGGGCATTAAGTCTACTATGTTTATCCAAGAGGATACATTCAA 504
|||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 421 CTGATGTGGTCCCATGGTGGGCGCTAAGTCTACTTTGTTTATCCAAGAGGATACATTCAA 480
Query 505 TCTTTGTTCTCCGTCTCTTTAATGATTGTTTTGCCATGACTCTCCTACATGCATCAATGG 564
|||||||||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 481 TCTTTGTTCTCCGTCTTTTTAACGATTGTTTTACCATGACTCTCCTACATTCATCAATGG 540
Query 565 CTCTCTTTCTCTATCGTAAATGGCATCTAGGGATGCTTGTTTTCAGTGGAGCTGTTTCTG 624
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCCTCTTTCTCTATCATAAATGGCATCTAGGGATGCTTGTTTTCAGTGGAGCTGTTTCTA 600
Query 625 TAAAGATGAATGTACTTTTGTATGCTCCAACTTTGTTACTTCTGCTACTTAAGGCCATGA 684
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 601 TAAAGATGAATGTACTTTTGTATGCTCCACCTTTGTTACTTCTGCTACTAAAGGCCATGA 660
Query 685 ATATCATTGGAGTGGTGTCTGCTTTGGCTGGTGCAGCTCTTGTTCAGATACTCGTGGGAC 744
|||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 ATATAATTGGAGTGGTATCTGCTTTGGCTGGTGCAGCTCTTGTTCAGTTACTCGTGGGAT 720
Query 745 TGCCGTTTCTGATAACATATCCGGTTTCATACATAGCAAACGCCTTTGATCTTGGACGTG 804
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGCCCTTTCTGATAACATATCCGGTTTCATACATAGCAAACGCCTTTGATCTTGGACGTG 780
Query 805 TTTTCATTCATTTCTGGTCTGTTAACTTCAAATTTGTTCCAGAACGAGTTTTTGTGTCCA 864
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 TTTTCATTCACTTCTGGTCTGTTAACTTCAAATTTGTTCCAGAACGAGTTTTTGTATCCA 840
Query 865 AAGAATTTGCAGTATGCTTGCTCATTGCTCACCTTTTTCTCCTTGTGGCGTTCGCAAATT 924
|||||||||||||||||||||||||||| ||||||| |||||||| |||||| |||||||
Sbjct 841 AAGAATTTGCAGTATGCTTGCTCATTGCACACCTTTGTCTCCTTGCGGCGTTTGCAAATT 900
Query 925 ATAAGTGGTGCAAGCATGAAGGCGGGATTATAGGCTTCATGCGTTCTAGGCATTTCTTCT 984
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATAAATGGTGCAAGCATGAAGGCGGGATTATAGGCTTCATGCGTTCTAGGCATTTCTTCT 960
Query 985 TGACACTTCCGTCTTCACTCTCGTTCAGTGATGTATCAGCCTCACGGATTATTACGAAAG 1044
|||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 961 TGACGCTTCCGTCTTCACTCTCGTTCAGTGATGTCTCAGCCTCACGGATTCTTACGAAAG 1020
Query 1045 AACATGTCGTCACGGCCATGTTTGTTGGGAATTTCATCGGCATTGTATTTGCTCGCTCTC 1104
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1021 AACATATCGTCACGGCCATGTTTGTTGGGAATTTCATCGGCATTGTATGTGCTCGCTCTC 1080
Query 1105 TGCACTACCAGTTCTACTCATGGTACTTCTATTCGCTACCTTATCTACTATGGAGAACAC 1164
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1081 TGCACTACCAGTTCTACTCATGGTACTTCTATTCGCTACCTTATCTGCTATGGAGAACAC 1140
Query 1165 CGTTTCCCACTTGGCTGCGCTTGATCATGTTCCTCGGCATTGAGCTCTGTTGGAATGTTT 1224
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || |
Sbjct 1141 CGTTTCCCACTTGGCTGCGCTTGATCGTGTTCCTCGGCATCGAGCTCTGTTGGAACGTGT 1200
Query 1225 ATCCATCAACACC-GTCCTCCTCGGGTTTGCTATTGTGTCTACACTTGATCATTCTGGTG 1283
||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1201 ATCCATCAACACCAG-CCTCCTCGGGTTTGCTATTGTGTCTACACTTTATCATTCTAGTC 1259
Query 1284 GGTCTCTGGTTAGCTCCTTCAGTCGATCCTTATCAGCTCAAAGAACACCCTAAATCCCAA 1343
|||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||
Sbjct 1260 GGTCTCTGGTTAGCTCCTTCAGGCGATCCTTACCAGCTCAAAGAAGACCCTAAATCCCAA 1319
Query 1344 ATACACAAAAAAGCATAACTGAACCTTTTGATGCTCtttttt 1385
| ||||||||| |||||| |||||||||||||||||||||||
Sbjct 1320 ACACACAAAAA-GCATAAGTGAACCTTTTGATGCTCTTTTTT 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56068840640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5