BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47770.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483960 jgi|Araly1|483960|fgenesh2_kg.4__3020__AT2G47770.1 1327 0.0
> Ahg483960 jgi|Araly1|483960|fgenesh2_kg.4__3020__AT2G47770.1
Length=1038
Score = 1327 bits (718), Expect = 0.0
Identities = 935/1032 (91%), Gaps = 45/1032 (4%)
Strand=Plus/Plus
Query 27 TATCTaaaaacaaaaaaCAATTAATTAGCATTCGACGTGTACATATCACTCGCCACGTG- 85
|||| |||||| |||||||||| ||| ||||| ||||||||| |||| ||||||||||
Sbjct 38 TATCCAAAAAC--AAAACAATTATTTAACATTCCACGTGTACACATCAGTCGCCACGTGT 95
Query 86 ---T--A-CA--AGAGCCTTGGCCTTTTTGCTTCTTCTTCTTGTCTATT-A-AT-ATCAT 134
| | || ||||||||||||| |||||||||||||| |||||| | || |||||
Sbjct 96 CTCTCCATCACCAGAGCCTTGGCCTCTTTGCTTCTTCTTC---TCTATTAATATCATCAT 152
Query 135 CTCCTGATTATACTCTCTTTTGACCAAGCTGCTTCTTCTCCATCTATCCAACATCTCAAA 194
|||||||||||| ||||| |||||||||||||||||| | ||| | | |||||||||
Sbjct 153 CTCCTGATTATA--CTCTTCTGACCAAGCTGCTTCTTCAACTTCT-T-CTCCATCTCAAA 208
Query 195 TCTCAGTAATCTTGTTCCTTCGATT-CTGTTTTGGACGTTTGTAATGGATTCTCAGGACA 253
| ||| |||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 209 TTTCAATAATCTTGTTTCTTCG-TTCCTGTTTTGGACGTTTGTAATGGATTCTCAGGACA 267
Query 254 TCAGATACCGCGGCGGAGACGACAGAGACGCTGCAACGACGGCTATGGCCGAGACAGAGA 313
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 268 TCAGATACCGTGGCGGAGACGACAGAGACGCTGCGACGACGGCTATGGCTGAGACAGAGA 327
Query 314 GGAAAAGCGCTGACGACAACAAAGGAAAACGCGATCAAAAGAGGGCGATGGCGAAACGTG 373
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 328 GGAAAAACGCTGACGACAACAAAGGAAAACGCGATCAAAAGAGGGCCATGGCGAAACGCG 387
Query 374 GTCTCAAGTCTCTGACGGTAGCGGTTGCGGCTCCTGTGCTCGTGACGCTCTTCGCTACGT 433
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 388 GTCTCAAATCTCTGACGGTAGCGGTTGCGGCTCCTGTGCTCGTGACGCTCTTCGCCACGT 447
Query 434 ATTTCCTCGGCACAAGCGACGGATACGGGAATCGAGCTAAGTCCTCGTCGTGGATCCCAC 493
|||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 448 ATTTCCTCGGCACAAGCGACGGCTACGGGAATCGAGCTCGGTCGTCGTCGTGGATCCCAC 507
Query 494 CTCTGTGGCTCCTACACACAACGTGTCTCGCTTCTAGTGGTCTGATGGGTTTGGCTGCGT 553
||||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||||
Sbjct 508 CTCTGTGGCTCCTACACACCACGTGTCTCGCGTCGAGCGGTCTGATGGGATTGGCTGCGT 567
Query 554 GGCTTGTATGGGTTGACGGTGGCTTCCACAAGAAGCCCAATGCTCTGTATCTTTACTTAG 613
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 568 GGCTTGTATGGGTCGACGGTGGCTTCCACAAGAAGCCCAATGCTCTGTATCTTTACTTGG 627
Query 614 CTCAGTTTTTGCTCTGTTTGGTTTGGGATCCGGTTACGTTCCGCGTCGGGTCGGGAGTAG 673
|||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |||
Sbjct 628 CTCAGTTTATGCTCTGTTTGGTTTGGGATCTGGTTACGTTCCGGGTCGGGTCGGGAATAG 687
Query 674 CGGGGCTTGCGGTGTGGTTGGGTCAATCGGCTGCGTTATTCGGATGCTACAAGGCCTTTA 733
| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 688 CCGGGCTTGCGGTGTGGTTGGGTCAATCAGCTGCGTTGTTCGGATGTTACAAGGCCTTTA 747
Query 734 ATGAGATAAGTCCGGTCGCTGGTAATCTGGTAAAGCCGTGTTTGGCTTGGGCTGCCTTTG 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 748 ATGAGATAAGTCCGGTCGCTGGTAATCTGGTAAAGCCGTGTTTGGCTTGGGCTGCATTTG 807
Query 794 TAGCCGCTGTTAATGTAAAGCTTGCAGTCGCGTGAGATCTGTAAACGCTATACGATGATG 853
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |
Sbjct 808 TAGCCGCTGTTAATGTAAAGCTTGCAGTCGCGTGAGATCTGTAAACGCCAC-C-ATG-T- 863
Query 854 TTTGTAGAGTCTGAGTCATATGAGTGTTT-CTTGTTGtttttgttttttGTGATATATAC 912
|| |||||||| | | || |||||||| ||| | | |||||| |||||||||||
Sbjct 864 TT-GTAGAGTC--A-T-AT--GAGTGTTTTCTT-T-G-----GTTTTT-GTGATATATAC 908
Query 913 CATAAAAGATGTCTTTGCGATCCAATGGTCTGGTCATTGTGGAGTAATAGACATGAACAT 972
||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 909 -ATAAA-GATGTCATTGCGATCCAATGGTCTACTCATTGTGGAGTAATAGACATGAACAT 966
Query 973 GATATACTTGAGAAATAATGTGATATTGTAGAAGTTTTAAGCGTTGGTCTGAAATCAAAC 1032
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 967 GATATACTTGAGAAATAATGTGATATGGTATAAGTTTTAAGCGTTGGTCTGAAATCAAAC 1026
Query 1033 TGTGAGATTCTT 1044
|||||||||||
Sbjct 1027 AGTGAGATTCTT 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5