BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47790.1 Length=1398 Score E Sequences producing significant alignments: (Bits) Value Ahg935767 jgi|Araly1|935767|scaffold_403755.1 1827 0.0 > Ahg935767 jgi|Araly1|935767|scaffold_403755.1 Length=1210 Score = 1827 bits (989), Expect = 0.0 Identities = 1144/1218 (94%), Gaps = 14/1218 (1%) Strand=Plus/Plus Query 64 ATTTCGCTGAAACGGCAAATGGAAGAAGTGTCGTCGGAGATGGAAGTGGAGGTTCAAAAT 123 |||||||| |||| | ||||||||||| |||||||||||||||||||||||| |||||| Sbjct 6 ATTTCGCTCAAAC--C-AATGGAAGAAGCGTCGTCGGAGATGGAAGTGGAGGTGCAAAAT 62 Query 124 CGTCAGCTTTCGGATTCTTCTCCGGCTCAAAACGTGAAGAAATTTGGGCTCAAGAACTCT 183 || ||||||| |||||||||| | ||||||||| | ||||||||||||||||| Sbjct 63 CGCCAGCTTTTGGATTCTTCTTCAGCTCAAAAC-----G----TTGGGCTCAAGAACTCT 113 Query 184 ATTCAGACCAACTTCGGCTCTGACTACGTCTTCCAGATTGTCCCAAAAATCGATTGGACA 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114 ATTCAGACCAACTTCGGCTCTGACTACGTCTTCCAGATTGTCCCAAAAATCGATTGGACA 173 Query 244 GCAATCGCGGTTTCCTTATCAACCAACACCGTCAAGCTTTACTCGCCGGTGACTGGTCAG 303 ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 174 GCAATTGCGGTTTCGTTATCCACCAACACCGTCAAGCTTTACTCTCCGGTGACTGGTCAA 233 Query 304 TACTACGGCGAATGTAAAGGCCACTCCGATACCGTCAATCAGATTGCGTTTTCCTCCGAC 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 TACTACGGCGAATGTAAAGGCCACTCCGATACCGTCAATCAGATTGCGTTTTCCTCCGAC 293 Query 364 TCGGCGGCGTCTCCTCACGTTTTGCACTCTTGTTCCTCCGATGGTACCATTAGATCTTGG 423 || ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 294 TCAGCGGCCTCTCCTCACGTTCTGCACTCTTGTTCCTCCGATGGCACCATTAGATCTTGG 353 Query 424 GACACTCGAAGTTTCCAACAGGTTTCGCGTATTGATACTGGGAATGATCAGGAGATTTTC 483 ||||| |||||||||||||||||||| |||||| | ||||| ||||||||||| ||||| Sbjct 354 GACACGCGAAGTTTCCAACAGGTTTCATGTATTGTTGCTGGGGATGATCAGGAGGTTTTC 413 Query 484 AGCTTCTCCTATGGAGGTGCTGCAGATAATCTTCTGGCTGGTGGATGCAAAGAGCAGGTT 543 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 414 AGCTTCTCCTATGGAGGTGCTGCAGATCATCTTTTGGCTGGTGGATGCAAAGAGCAGGTT 473 Query 544 CTTTTGTGGGACTGGAGAAACTCAAAGCAAGTTGCTTGTTTAGAGGAATCCCACATGGAC 603 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 CTTCTGTGGGACTGGAGAAACTCAAAGCAAGTTGCTTGTTTAGAGGAATCCCACATGGAC 533 Query 604 GACGTCACTCAGGTACACTTTGTTCCTAACAAGCCCAACAAGCTTCTTTCCGCTTCCGTG 663 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 534 GACGTCACTCAGGTACACTTTGTTCCTAACAACCCCAACAAGCTTCTTTCAGCTTCCGTG 593 Query 664 GATGGATTGATATGTCTTTTTAACACTGAAGGTGATATCAATGACGATGATCATCTGGAA 723 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 594 GATGGATTGATATGTCTATTTAACACTGAAGGTGATATCAATGACGATGACCATCTGGAA 653 Query 724 TCTGTCATCAACGTGGGAACTTCAATTGGCAAAATAGGTTTCCTCGGAGATGGCTATAAA 783 ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 654 TCTGTGATCAATGTGGGAACTTCAATTGGCAAAATAGGTTTCCTCGGAGATTGCTATAAA 713 Query 784 AAGCTCTGGTGTCTCACTCATATAGAAACTCTAAGTATTTGGAATTGGGAAGACGGAAGC 843 ||||||||||||||||||||||||||||||||||| |||||||| ||| |||| |||||| Sbjct 714 AAGCTCTGGTGTCTCACTCATATAGAAACTCTAAGCATTTGGAACTGGCAAGATGGAAGC 773 Query 844 TGTGAAGTCAACCTAGAGAAAGCTCGGGAACTCGCATCAGATAGTTGGACTCAAGATAAT 903 |||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||| Sbjct 774 TGTGAAGTCAACCTAGAGAAAGCTCGGGAACTCGCATCTGATAATTGGGCTCAGGATAAT 833 Query 904 GTTGATTATTTTGTTGATTGTCATTGTCCAGGAGGTGAAGATTTATGGGTGATCGGTGGA 963 |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| Sbjct 834 GTTGATTATTTTGTTGATTGCCATTGTCCAGGAGGGGAAGATTTATGGGTGATTGGTGGA 893 Query 964 ACGTGCGCAGGAACCGTTGGTTATTTTCCGGTGAACTACAAACAGCCTGGATCAATCGGT 1023 || |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 894 ACCTGCGCAGGAACCATTGGTTATTTTCCGGTGAACTATAAACAGCCTGGATCAATCGGT 953 Query 1024 ACCGCTGAAGCTATTCTTGGTGGAGGTCACATAGATGTAGTAAGGAGCGTTCTGCAGATG 1083 |||||||||||||| ||||||||||||||| |||||||||||||||| ||| |||||||| Sbjct 954 ACCGCTGAAGCTATCCTTGGTGGAGGTCACGTAGATGTAGTAAGGAGTGTTGTGCAGATG 1013 Query 1084 CCAGGCGAGTATGGAGGAGCTGCAGGGTTATTTGGATGGACTGGGGGTGAAGATGGGCGA 1143 ||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1014 CCATGTGAGTATGGAGGAGCTGCAGGGTTATTTGGATGGACTGGCGGTGAAGATGGGCGG 1073 Query 1144 CTATGTTGCTGGAAGTCGGATGAGGATGCTACCGAGATTAACCGGTCTTGGACTTCAAGT 1203 ||||||||||||||||| |||||| || |||| |||| |||||||||||||||||||||| Sbjct 1074 CTATGTTGCTGGAAGTCCGATGAGAATTCTACAGAGAATAACCGGTCTTGGACTTCAAGT 1133 Query 1204 GAGTTGGTTGTTAAGCCGCCAAGGAACCGCAAGAAAAACAGACACTCTCCTTACTAGTAA 1263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 GAGTTGGTTGTTAAGCCGCCAAGGAACCGCAAGAAAAACAGACACTCTCCTTACTAGTAA 1193 Query 1264 ACAGA-TACTACTTTTTG 1280 || || |||||||||||| Sbjct 1194 AC-GAATACTACTTTTTG 1210 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52259816140 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5