BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47790.1
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935767 jgi|Araly1|935767|scaffold_403755.1 1827 0.0
> Ahg935767 jgi|Araly1|935767|scaffold_403755.1
Length=1210
Score = 1827 bits (989), Expect = 0.0
Identities = 1144/1218 (94%), Gaps = 14/1218 (1%)
Strand=Plus/Plus
Query 64 ATTTCGCTGAAACGGCAAATGGAAGAAGTGTCGTCGGAGATGGAAGTGGAGGTTCAAAAT 123
|||||||| |||| | ||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 6 ATTTCGCTCAAAC--C-AATGGAAGAAGCGTCGTCGGAGATGGAAGTGGAGGTGCAAAAT 62
Query 124 CGTCAGCTTTCGGATTCTTCTCCGGCTCAAAACGTGAAGAAATTTGGGCTCAAGAACTCT 183
|| ||||||| |||||||||| | ||||||||| | |||||||||||||||||
Sbjct 63 CGCCAGCTTTTGGATTCTTCTTCAGCTCAAAAC-----G----TTGGGCTCAAGAACTCT 113
Query 184 ATTCAGACCAACTTCGGCTCTGACTACGTCTTCCAGATTGTCCCAAAAATCGATTGGACA 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 ATTCAGACCAACTTCGGCTCTGACTACGTCTTCCAGATTGTCCCAAAAATCGATTGGACA 173
Query 244 GCAATCGCGGTTTCCTTATCAACCAACACCGTCAAGCTTTACTCGCCGGTGACTGGTCAG 303
||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 174 GCAATTGCGGTTTCGTTATCCACCAACACCGTCAAGCTTTACTCTCCGGTGACTGGTCAA 233
Query 304 TACTACGGCGAATGTAAAGGCCACTCCGATACCGTCAATCAGATTGCGTTTTCCTCCGAC 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TACTACGGCGAATGTAAAGGCCACTCCGATACCGTCAATCAGATTGCGTTTTCCTCCGAC 293
Query 364 TCGGCGGCGTCTCCTCACGTTTTGCACTCTTGTTCCTCCGATGGTACCATTAGATCTTGG 423
|| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 294 TCAGCGGCCTCTCCTCACGTTCTGCACTCTTGTTCCTCCGATGGCACCATTAGATCTTGG 353
Query 424 GACACTCGAAGTTTCCAACAGGTTTCGCGTATTGATACTGGGAATGATCAGGAGATTTTC 483
||||| |||||||||||||||||||| |||||| | ||||| ||||||||||| |||||
Sbjct 354 GACACGCGAAGTTTCCAACAGGTTTCATGTATTGTTGCTGGGGATGATCAGGAGGTTTTC 413
Query 484 AGCTTCTCCTATGGAGGTGCTGCAGATAATCTTCTGGCTGGTGGATGCAAAGAGCAGGTT 543
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 414 AGCTTCTCCTATGGAGGTGCTGCAGATCATCTTTTGGCTGGTGGATGCAAAGAGCAGGTT 473
Query 544 CTTTTGTGGGACTGGAGAAACTCAAAGCAAGTTGCTTGTTTAGAGGAATCCCACATGGAC 603
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CTTCTGTGGGACTGGAGAAACTCAAAGCAAGTTGCTTGTTTAGAGGAATCCCACATGGAC 533
Query 604 GACGTCACTCAGGTACACTTTGTTCCTAACAAGCCCAACAAGCTTCTTTCCGCTTCCGTG 663
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 534 GACGTCACTCAGGTACACTTTGTTCCTAACAACCCCAACAAGCTTCTTTCAGCTTCCGTG 593
Query 664 GATGGATTGATATGTCTTTTTAACACTGAAGGTGATATCAATGACGATGATCATCTGGAA 723
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 594 GATGGATTGATATGTCTATTTAACACTGAAGGTGATATCAATGACGATGACCATCTGGAA 653
Query 724 TCTGTCATCAACGTGGGAACTTCAATTGGCAAAATAGGTTTCCTCGGAGATGGCTATAAA 783
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 654 TCTGTGATCAATGTGGGAACTTCAATTGGCAAAATAGGTTTCCTCGGAGATTGCTATAAA 713
Query 784 AAGCTCTGGTGTCTCACTCATATAGAAACTCTAAGTATTTGGAATTGGGAAGACGGAAGC 843
||||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||
Sbjct 714 AAGCTCTGGTGTCTCACTCATATAGAAACTCTAAGCATTTGGAACTGGCAAGATGGAAGC 773
Query 844 TGTGAAGTCAACCTAGAGAAAGCTCGGGAACTCGCATCAGATAGTTGGACTCAAGATAAT 903
|||||||||||||||||||||||||||||||||||||| |||| |||| |||| ||||||
Sbjct 774 TGTGAAGTCAACCTAGAGAAAGCTCGGGAACTCGCATCTGATAATTGGGCTCAGGATAAT 833
Query 904 GTTGATTATTTTGTTGATTGTCATTGTCCAGGAGGTGAAGATTTATGGGTGATCGGTGGA 963
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 834 GTTGATTATTTTGTTGATTGCCATTGTCCAGGAGGGGAAGATTTATGGGTGATTGGTGGA 893
Query 964 ACGTGCGCAGGAACCGTTGGTTATTTTCCGGTGAACTACAAACAGCCTGGATCAATCGGT 1023
|| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 894 ACCTGCGCAGGAACCATTGGTTATTTTCCGGTGAACTATAAACAGCCTGGATCAATCGGT 953
Query 1024 ACCGCTGAAGCTATTCTTGGTGGAGGTCACATAGATGTAGTAAGGAGCGTTCTGCAGATG 1083
|||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 954 ACCGCTGAAGCTATCCTTGGTGGAGGTCACGTAGATGTAGTAAGGAGTGTTGTGCAGATG 1013
Query 1084 CCAGGCGAGTATGGAGGAGCTGCAGGGTTATTTGGATGGACTGGGGGTGAAGATGGGCGA 1143
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1014 CCATGTGAGTATGGAGGAGCTGCAGGGTTATTTGGATGGACTGGCGGTGAAGATGGGCGG 1073
Query 1144 CTATGTTGCTGGAAGTCGGATGAGGATGCTACCGAGATTAACCGGTCTTGGACTTCAAGT 1203
||||||||||||||||| |||||| || |||| |||| ||||||||||||||||||||||
Sbjct 1074 CTATGTTGCTGGAAGTCCGATGAGAATTCTACAGAGAATAACCGGTCTTGGACTTCAAGT 1133
Query 1204 GAGTTGGTTGTTAAGCCGCCAAGGAACCGCAAGAAAAACAGACACTCTCCTTACTAGTAA 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GAGTTGGTTGTTAAGCCGCCAAGGAACCGCAAGAAAAACAGACACTCTCCTTACTAGTAA 1193
Query 1264 ACAGA-TACTACTTTTTG 1280
|| || ||||||||||||
Sbjct 1194 AC-GAATACTACTTTTTG 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5