BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47810.1
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483964 jgi|Araly1|483964|fgenesh2_kg.4__3024__AT2G47810.1 678 0.0
> Ahg483964 jgi|Araly1|483964|fgenesh2_kg.4__3024__AT2G47810.1
Length=761
Score = 678 bits (367), Expect = 0.0
Identities = 450/487 (92%), Gaps = 17/487 (3%)
Strand=Plus/Plus
Query 215 ATTCGTTCCAAAATCCAATCCCTCGATACCAGAATTACAACTTCGGGAGCAGCTCATCTA 274
||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||
Sbjct 189 ATTCGTTCCAAAATCCAATCCCTCGATACCAGAATTATAACTTCGCAAGCAGCTCGTCTC 248
Query 275 ATCATCAACATGAACATGATGGGTTAGTGGTGGTGGTGGAGGATCAACAGCAAGAAGAAA 334
||||||||||| || | | | |||||||||||||||||||| ||||||||||
Sbjct 249 ATCATCAACAT---CA--A-----CA-T-GTGGTGGTGGAGGATCAACAACAAGAAGAAA 296
Query 335 GCATGATGGTAAAAGAACAAGACAGGCTACTTCCGATAGCAAACGTAGGAAGGATCATGA 394
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCATGATGATAAAAGAACAAGACAGGCTACTTCCGATAGCAAACGTAGGAAGGATCATGA 356
Query 395 AGAACATCCTCCCAGCAAACGCAAAGGTCTCTAAAGAAGCCAAAGAGACTATGCAAGAAT 454
||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 AGAACATTCTCCCACCAAACGCAAAGGTCTCCAAAGAAGCCAAAGAGACTATGCAAGAAT 416
Query 455 GTGTGTCCGAGTTCATTAGCTTCGTCACGGGAGAAGCATCCGATAAATGCCACAAGGAGA 514
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 417 GTGTCTCCGAGTTCATTAGCTTCGTCACCGGAGAAGCATCCGATAAATGTCACAAGGAGA 476
Query 515 AGCGAAAGACCGTTAATGGAGACGATATCTGTTGGGCTATGGCTAATCTAGGGTTTGATG 574
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 477 AGCGAAAGACCGTCAATGGAGACGATATCTGTTGGGCTATGGCAAATCTAGGGTTTGATG 536
Query 575 ATTACGCCGCCCAGCTCAAGAAGTACTTACATCGTTACCGAGTTCTCGAAGGTGAGAAAC 634
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 537 ATTATGCCGCCCAGCTCAAGAAGTACTTGCATCGTTACCGAGTTCTCGAAGGTGAGAAAC 596
Query 635 CTAATCATCA-C--GGCAAAGGAGGACCTAAATCCTCGCCAGATAATTAAAATTCTTCCA 691
|||||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 597 CTAATCATCATCATGGCAAAGGAGGACCTAAATCCTCGCCGGATAATTAA--TTCTTCCA 654
Query 692 TCGCTTT 698
||| |||
Sbjct 655 TCGGTTT 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32175741948
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5