BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47810.1 Length=869 Score E Sequences producing significant alignments: (Bits) Value Ahg483964 jgi|Araly1|483964|fgenesh2_kg.4__3024__AT2G47810.1 678 0.0 > Ahg483964 jgi|Araly1|483964|fgenesh2_kg.4__3024__AT2G47810.1 Length=761 Score = 678 bits (367), Expect = 0.0 Identities = 450/487 (92%), Gaps = 17/487 (3%) Strand=Plus/Plus Query 215 ATTCGTTCCAAAATCCAATCCCTCGATACCAGAATTACAACTTCGGGAGCAGCTCATCTA 274 ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| Sbjct 189 ATTCGTTCCAAAATCCAATCCCTCGATACCAGAATTATAACTTCGCAAGCAGCTCGTCTC 248 Query 275 ATCATCAACATGAACATGATGGGTTAGTGGTGGTGGTGGAGGATCAACAGCAAGAAGAAA 334 ||||||||||| || | | | |||||||||||||||||||| |||||||||| Sbjct 249 ATCATCAACAT---CA--A-----CA-T-GTGGTGGTGGAGGATCAACAACAAGAAGAAA 296 Query 335 GCATGATGGTAAAAGAACAAGACAGGCTACTTCCGATAGCAAACGTAGGAAGGATCATGA 394 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 GCATGATGATAAAAGAACAAGACAGGCTACTTCCGATAGCAAACGTAGGAAGGATCATGA 356 Query 395 AGAACATCCTCCCAGCAAACGCAAAGGTCTCTAAAGAAGCCAAAGAGACTATGCAAGAAT 454 ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 357 AGAACATTCTCCCACCAAACGCAAAGGTCTCCAAAGAAGCCAAAGAGACTATGCAAGAAT 416 Query 455 GTGTGTCCGAGTTCATTAGCTTCGTCACGGGAGAAGCATCCGATAAATGCCACAAGGAGA 514 |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 417 GTGTCTCCGAGTTCATTAGCTTCGTCACCGGAGAAGCATCCGATAAATGTCACAAGGAGA 476 Query 515 AGCGAAAGACCGTTAATGGAGACGATATCTGTTGGGCTATGGCTAATCTAGGGTTTGATG 574 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 477 AGCGAAAGACCGTCAATGGAGACGATATCTGTTGGGCTATGGCAAATCTAGGGTTTGATG 536 Query 575 ATTACGCCGCCCAGCTCAAGAAGTACTTACATCGTTACCGAGTTCTCGAAGGTGAGAAAC 634 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 537 ATTATGCCGCCCAGCTCAAGAAGTACTTGCATCGTTACCGAGTTCTCGAAGGTGAGAAAC 596 Query 635 CTAATCATCA-C--GGCAAAGGAGGACCTAAATCCTCGCCAGATAATTAAAATTCTTCCA 691 |||||||||| | |||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 597 CTAATCATCATCATGGCAAAGGAGGACCTAAATCCTCGCCGGATAATTAA--TTCTTCCA 654 Query 692 TCGCTTT 698 ||| ||| Sbjct 655 TCGGTTT 661 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32175741948 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5