BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47820.1
Length=2845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483966 jgi|Araly1|483966|fgenesh2_kg.4__3026__AT2G47820.1 3559 0.0
> Ahg483966 jgi|Araly1|483966|fgenesh2_kg.4__3026__AT2G47820.1
Length=2640
Score = 3559 bits (1927), Expect = 0.0
Identities = 2273/2439 (93%), Gaps = 28/2439 (1%)
Strand=Plus/Plus
Query 100 CTTCACACGCGAAGTTGACATCTAGATTCAATAC--AT-A--GATTGGCTC--TGCTTTT 152
||||| |||||||||||||||||||||||||||| || | ||| | || | |||||
Sbjct 1 CTTCAGACGCGAAGTTGACATCTAGATTCAATACATATCATCGATAGATTCATTTCTTTT 60
Query 153 TGATTTTATTGCTCCACGTTGAATGTTCCGA---cttctt-ct-ttcttcttcttctGTG 207
|||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||
Sbjct 61 TGATTTTATTGCTCGACGTTGAATGTTCCGACTTCTTCTTGCTCTTCTTCTTCTTCTGTG 120
Query 208 GAGATTTCTTGGTGGTGACTTACTCAGATGGAGCCTATTCATTCAGATGACATGGAGGAA 267
||| || ||| | ||| || ||||||||||||||||||||||||||| ||||
Sbjct 121 GAGGTTAGTTGCCAAAGTCTTCCTGTGATGGAGCCTATTCATTCAGATGACAT---GGAA 177
Query 268 GCTTTTGTCGATGAATCCTCTATGCTATTGAATTCCCCTTATCTTAATGGTATTCACGGA 327
| |||| || |||| ||||||| |||| | |||||||||||||| ||||||||| |||||
Sbjct 178 GGTTTTCTCCATGATTCCTCTAAGCTACTCAATTCCCCTTATCTCAATGGTATTAACGGA 237
Query 328 GACCCTGATG-TACTTCCTCGCGTTGGAGATCAGTACCAGGCTGATCTACCTGTGCTACT 386
|| ||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 238 GATCCTGA-GCTACTTCCTCGCGTTGGAGATCAGTACCAGGCTGATATTCCTGTGCTACT 296
Query 387 CACTGAGTCTGATCGTCTAAAGCTCATTACTTGCTTTCATTCAGAGCCTCCCCTGCAGAA 446
|||||| ||||||||| |||||||||||| |||||||||||||| ||||||||||| |
Sbjct 297 CACTGACTCTGATCGTTTAAAGCTCATTAGATGCTTTCATTCAGATCCTCCCCTGCATAG 356
Query 447 ACTCCTTACTTTTGGCTTGCCTATCCCTCTTATGTGGACAAGAAGTGAGAAATTCAGAGG 506
|||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 357 TCTCCTTACTTTTCGCTTGCCTATCCCACTTATGTGGACTAGAAGTGAGAAATTCAGAGG 416
Query 507 TTTCCGTGAAGCCGATATTGATAA-AGCCAGTCCACCAGTCGATGATCAATCCTTGCAGA 565
|||||| |||||||||||||| || || |||||||||| || ||||||||||||| |
Sbjct 417 TTTCCGCGAAGCCGATATTGA-AATAGGCAGTCCACCAATC---CATCAATCCTTGCACA 472
Query 566 ATGCTGCTTGCATGAAACCGAGGAGTATTGTGCTTGCATTGCCTTGCCaaaaaaaCGCCA 625
| ||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 473 AAGCTGCTTCCATCAAACCTAGGAGTATTGTGCTTGCATTGCCATGCCAAAAAAATGCCA 532
Query 626 AGTTCAAGTTTGACTGGCTCGATAAGACCCTCTATCCATTCCCTGGGACTTTGGGTCAAC 685
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 533 AGTTCAAGTTTGACTGGCTCGATAAGAGCCTCTATCCATTCCCTGGGACTTTGGGTCAAT 592
Query 686 CTTGGGAAGATGCTGAGCAAGAGAGGTTTCTTCTTGGCCTCTACTGTCTTGGCAAAAACC 745
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 593 CTTGGGAAGATGCTGAGCAAGAGAGGTTTCTTCTTGGCCTCTACTGTCTTGGGAAAAACC 652
Query 746 TTGTCTTGGTGCAGAGATTTGTTGGGAGCAAGCACATGGGAGATATGCTCTCTTACTATT 805
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 653 TTGTCTTGGTGCAGAGGTTTGTTGGGAGCAAGCACATGGGAGATTTGCTCTCTTACTATT 712
Query 806 ACGGCAGCTTTTACAGGTCTACTGAATACCGGAGATGGGTAGATGGACGCAAGTCCAGAA 865
||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||||
Sbjct 713 ACGGCAGCTTTTACAGGTCTAATGAATACCAGAGATGGGTTGATGGACGCAAGTCGAGAA 772
Query 866 GCAGACGGTCTGTTCAAGGCCAGAAATTATTATCAGGCTGGAGGCAACAAGAGTTGCTCT 925
|||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 773 CCAGACGCTCTGTTCAAGGCCAGAAGTTATTATCAGGTTGGAGGCAACAAGAATTGCTCT 832
Query 926 CTCGGATCTCGTCTCATGTATCCGAGGAATGCAAGATTACGTTGCTTAAGGTATCTAAAG 985
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 833 CTCGGATCTCGTCTCATGTCTCTGAGGAATGCAAGAGTACGTTGCTTAAGGTATCTAAAG 892
Query 986 CATTTAGGGAAGATAAGATTGCACTGGAGGATTACGTCTTCACTTTAAAGAATACTGTAG 1045
| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 893 CTTTTAGGGAAGATAAGATTGCACTGGAGGATTATGTGTTCGCTTTAAAGAATACTGTAG 952
Query 1046 GCATTGATATGCTTACACAAGTTATTGGTATAGGTAAAGGGAAAAGAGATCTGACCAACT 1105
| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 953 GTATTGATATGCTTACACAAGTAATTGGTATAGGGAAAGGGAAAAGAGACCTGACCAACT 1012
Query 1106 GCGCGTTAGAGCCAACCAAGTTGAATCATGGAGCCTCTGGTAACTCTCAAGTACGAATAC 1165
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1013 GCGCGTTAGAGCCAACCAAGTTGAATCATGGAGCCTCTGGTAACTCTGAAGTACGAATAC 1072
Query 1166 GCAATGATCTTCCGATTGCGGATATAGTCAAATTCCTAACAGGAGAATATAGGATGAGCA 1225
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1073 GCAATGATCTTCCGATAGCGGATATAGTCAAATTCCTAACAGGGGAATATAGGATGAGCA 1132
Query 1226 AAACACGGTCCAGTGACCTCTTCTGGGAAGCTGTTTGGCCACGTTTGCTGGCAAGAGGGT 1285
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1133 AAACACGGTCCAGTGACCTCTTCTGGGAAGCTGTTTGGCCACGTTTGTTGGCAAGAGGGT 1192
Query 1286 GGCACTCTGAGCAGCCGAAAGATGGTCCAAAGAATTCTCTGGTTTTTCTCGTTCCGGAAG 1345
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1193 GGCACTCTGAGCAGCCGAAAGATGGTCCAAAGAATTCTCTTGTTTTTCTCGTTCCGGAAG 1252
Query 1346 CCAATAAGTTTTCCAGGAGGAAGATGTCAAAGGGGAATCACTACTTTGACTCTCTCACTG 1405
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CGAATAAGTTTTCCAGGAGGAAGATGTCAAAGGGGAATCACTACTTTGACTCTCTCACTG 1312
Query 1406 ATGTCTTGAACAAAGTTGCTTTAGATCCCACTCTTCTTGAGCTTGATGAGGATCTAGAGA 1465
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||
Sbjct 1313 ATGTCTTGAACAAAGTTGCTTTAGACCCCTCACTACTTGAGCTTGATGAGGATCTAGAGA 1372
Query 1466 GGAAGGGGAGCAAAGAAGAGGTTATCAAGAATGACCCTCCCACAAATTTAGAGGAGTTTG 1525
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1373 ACAAGGGGAGCAAAGAAGAGGTAATCAAGAATGACCCTCCCATAAATTTAGAGGAGTTTG 1432
Query 1526 ATGATTCTTCACCAAACAGCAAGAAGAAGAAAAAGTACCTACAGCCACGCAGCAAAACAA 1585
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1433 ATGATTCTTCACCAAACAGCAAGAAGAAGAAAAAGTACCTACAACCACGTAGCAAAACAA 1492
Query 1586 GAAAAATTCAGGAGGTCATGTTGTTTACAATTATCGATACCAGTGAGACGAATAGTATAG 1645
|||||||||||||||||||| ||||||| |||||||||||||||||||||||| || | |
Sbjct 1493 GAAAAATTCAGGAGGTCATGATGTTTACGATTATCGATACCAGTGAGACGAATGGTGTGG 1552
Query 1646 AAGGATGTACATTGAAAGAGCTCAGATCTCTGCCTGTTGGGACCGGCAGTTCA-ATAGCT 1704
|||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1553 AAGGATGTACATTGAAAGAGCTCAGATCTCTGCCTGTTGGGACCGGCAGTTCCCA-AGTT 1611
Query 1705 AACTCCTCAAGTTACTTGAGTGAATCTGAAGATAACATGTCAGAAGAATCTGAAAACAAG 1764
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1612 CACTCCCCAAGTTACTTGAGTGAATCTGAAGATAACCTGTCAGAAGAATCTGAAAACAAG 1671
Query 1765 GCAGAGACGACAGCTAAATCAATGGCTTCGAGAGTGTGTGGTGGGGGCAGCATTAGTTCT 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1672 GCAGAGACGACAGCTAAATCAATGGCTTCGAGAGTGTGTGGTGGGGGCAGCATTAATTCT 1731
Query 1825 GGTAAGAGCAGCTCTGTAAACATGGACAATGCCACGAGTCCAAGCACCATTTCTCTCAAT 1884
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1732 GGTAAGAGCAGCTCTGTAAACATGGACAATGCCACGAGTCGAAGCACCAATTCTCTCAAT 1791
Query 1885 GAGAGACAGCAGAAGAACCGGAAAGGCGGGAGACCAAGAAATCCAAAATTGTTACCTGTC 1944
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1792 GAGAGACAGCAGAGGAACCGGAAAGGCGGGAGACCAAGAAATCCAAAGTTGTTACCTGTC 1851
Query 1945 TGCACCAAAAGGAGTAGTTTGGCAGATTGTACCTTGCGAGAAGCAGGTTGTTTTGGTGAA 2004
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1852 TGCACCAAAAGGAGTAGCTTGGCAGATTGTACCTTGAGAGAAGCAGGTTGTTTTGGTGAA 1911
Query 2005 ACCCAGTCCAGGAAGAAGAAACCATTGAAGAAAGGGAAACATATGAGACCAAACCCATTA 2064
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1912 ACCCAGTCCAGGAAGAAGAAACCAGTGAAGAAGGGGAAACATATGAGACCAAACCCATTA 1971
Query 2065 AAAGCTGATCTAAATGTAGTATTGACGAGAGAGGAGCGCATCAA-CGAAGATAAAACTCT 2123
||||||||||||||||||| |||| ||||||||| | |||| | | ||||| |||| ||
Sbjct 1972 GAAGCTGATCTAAATGTAGTGTTGATGAGAGAGGAACACATCGATC-AAGATCAAACACT 2030
Query 2124 GAAACTGTCCTCAACCAGTTCCTTTGCAAGAGATAGCTCTTGTCGAAGAAAC-ATAGACC 2182
||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 2031 GAAACTGTCCTCAACCAGTTCCTTTGCAATAGATAGCTCTTGTCGAAGAAACGA-AGACC 2089
Query 2183 GAGAAATATCACCAGAACGATCTGAAAGCAGAGAAGATTTTGATTTGAACGTTTCACAAA 2242
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 2090 GAGAAATATCACCAGAACGATCTGAGACCAGAGAAGATTTTGATTTGAACGTTTCACAGA 2149
Query 2243 TCTCCCTAGAACGTGAAGCTGATGGTACTGATACTGTCATGGCAGACGTTGTACAGAACA 2302
||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||
Sbjct 2150 TCTCCCTAGAACGTGAAGCTGATAATACTGATACTGTCATCGTAGACATTGTACAGAACA 2209
Query 2303 GTGAGAGCTCTTGTGCCGAGCAGTCCTCTGTTCAAGTGGATGTGGAAAAGCAGTGTAAGC 2362
||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 2210 GTGAGAGCTCTTGTGCCGAGCAGTCTTCTGTTCAAGTGGATGTAGAAATGCAGTGTAAGC 2269
Query 2363 CTCAGGAGTTGCAAGTAACCGCGGATCTCCTTCCTGAACGGAGGCAGAGTACAAGGACCC 2422
|||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 2270 CTCAGGAGTTGCGAGTAACCGCAGATCTCCTTCCTGGACGGAGGCAGAGTACAAGGACCC 2329
Query 2423 GACCCTTGACTACAAAGGCACTGGAAGCTTTTGCTTTTGGGTACCTTGGTAACTCGAATA 2482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2330 GACCGTTGACTACAAAGGCACTGGAAGCTTTTGCTTTTGGGTACCTTGGTAACTCGAATA 2389
Query 2483 AGGAGAGAAAGGCTTCAGAGGAGTCGAGAACAAAGTCTA 2521
|| |||||||||||||||||||||| |||||||||||||
Sbjct 2390 AGAAGAGAAAGGCTTCAGAGGAGTCAAGAACAAAGTCTA 2428
Score = 361 bits (195), Expect = 2e-98
Identities = 245/267 (92%), Gaps = 12/267 (4%)
Strand=Plus/Plus
Query 2521 AATAAGAAGAGAAAGGCTTCAGAGGAGTCAAGAACAAAGTCTACAAAGCGCATCCATCGT 2580
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2386 AATAAGAAGAGAAAGGCTTCAGAGGAGTCAAGAACAAAGTCTACAAAGCGCATCCACCGT 2445
Query 2581 CACTTACCTGTGTCCTCCAAGTTCAGAAACGGAACTGTAGAGGATGGTTCAAACACTGAC 2640
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2446 CACTCACTTGTGTCCTCCAAGTTCAGAAACGGAACTGTAGAGGATGGTTCAAACACTGAC 2505
Query 2641 GAGACTGAATAGACTAGCTTCGATCTGAAATTGACATTTCTGCAAATACTGACCAAGCGC 2700
|||| |||||||||||||||||||||||||||||||| |||||| ||||| | ||
Sbjct 2506 GAGAATGAATAGACTAGCTTCGATCTGAAATTGACATGTCTGCATATACT-A--AA---- 2558
Query 2701 AAAAATTGGGAGGACTTTAGCAGCTAGAGTCAATATAGCAACATAGTTATAGTAAATGTT 2760
||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 2559 -----TTGGGAGGAATTTAGCAGTTAGAGTCAATATAGCAACATAGTTAGAGTAAATGTT 2613
Query 2761 TTGCCTTTTGTTTCTGTTACCCTCATC 2787
||||||||||||||||| |||||||||
Sbjct 2614 TTGCCTTTTGTTTCTGTCACCCTCATC 2640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107376400655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5