BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47840.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483969 jgi|Araly1|483969|fgenesh2_kg.4__3029__AT2G47840.1 992 0.0
> Ahg483969 jgi|Araly1|483969|fgenesh2_kg.4__3029__AT2G47840.1
Length=674
Score = 992 bits (537), Expect = 0.0
Identities = 606/639 (95%), Gaps = 5/639 (1%)
Strand=Plus/Plus
Query 44 AATGGCGTCTCTGTGCCTTTCTCTCCACCAAACCCT-A--ACTAATCCCCTGTCGGCTCC 100
|||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||||
Sbjct 1 AATGGCGTCTCTGTGCCTCTCTCTCCACCAAACCCTAAGTACTAATCCCCTGGCGGCTCT 60
Query 101 CAGATGCAGACCACTCAGCCTCTCCTTCCCCGGATCCTCAACCTTCTCGATCCGCCCCTC 160
|||| |||||||||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 61 CAGAGGCAGACCACTCAGCCTCTCCTTCCCCGGATCCTCCACCGTCTCCATCCGCCCCTC 120
Query 161 TA-GCAGACGCGCAACCGCCTTGACGACCCGCGCCTCCTACACCCCGACGCCGGCGACTG 219
| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 121 -AGGCAGACACGCAACCGCCGTGACGACACGCGCCTCCTACACCCCGACGCCGGCGACGG 179
Query 220 AGCGCGTGATTTCGATAGCGTCGTACGCGCTGCCGTTCTTCAATTCTCTGCAGTACGGGC 279
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 AGCGCGTGATTTCGATAGCGTCGTACGCGCTGCCGTTCTTCAATTCGCTGCAGTACGGGC 239
Query 280 GGTTCCTGTTCGCGCAGTACCCAAGGCTGGGATTGCTGTTCGAGCCAATCTTCCCAATCC 339
| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 240 GATTCCTGTTCGCGCAGTACCCTAGGCTAGGATTGCTGTTCGAGCCAATATTCCCAATCC 299
Query 340 TGAACCTGTACAGATCGGTGCCGTACGCGAGCTTCGTGGCATTCTTCGGGCTGTACCTGG 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGAACCTGTACAGATCGGTGCCGTACGCGAGCTTCGTGGCATTCTTCGGGCTGTACCTGG 359
Query 400 GAGTGGTGAGGAACACGAGTTTCAGTAGGTACGTGAGGTTCAACGCGATGCAGGCGGTGA 459
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 GCGTGGTGAGGAACACGAGTTTGAGTAGGTACGTGAGGTTCAACGCGATGCAGGCGGTGA 419
Query 460 CGCTGGATGTGCTCCTGGCGGTTCCGGTGCTGCTGACCCGAATACTGGATCCGGGTCAAG 519
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 CGCTGGATGTGCTACTGGCGGTGCCGGTGCTGCTGACCCGAATACTGGATCCGGGTCAAG 479
Query 520 GAGGCGGGTTTGGAATGAAGGCGATGATGTGGGGGCACACGGGGGTTTTCGTCTTCAGCT 579
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 480 GAGGCGGGTTTGGAATGAAGGCGATGATGTGGGGACACACGGGTGTGTTCGTCTTCAGCT 539
Query 580 TTATGTGTTTTGTGTATGGAGTCGTCAGCTCCTTACTCGGCAAAACTCCATACATTCCAT 639
||||||||||||| || ||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 540 TTATGTGTTTTGTTTACGGAGTCGTCAGCTGCTTACTCGGCAAAACTCCCTACATTCCCT 599
Query 640 TTGTCGCTGATGCCGCCGGTAGACAACTCTAATTCCGGC 678
|||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGTCGCTGATGCCGCCGGTAGACAACTCTAATTCCGGC 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5