BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47860.3
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483974 jgi|Araly1|483974|fgenesh2_kg.4__3034__AT2G47860.1 2615 0.0
Ahg497182 jgi|Araly1|497182|fgenesh2_kg.39__2__AT2G47860.1 2604 0.0
> Ahg483974 jgi|Araly1|483974|fgenesh2_kg.4__3034__AT2G47860.1
Length=1884
Score = 2615 bits (1416), Expect = 0.0
Identities = 1650/1757 (94%), Gaps = 39/1757 (2%)
Strand=Plus/Plus
Query 261 AGTTTCCTCTCGTCTCTCGGAGTGGAAGAATCCGGAAACTTGTTCTGGAATCAAAAGACA 320
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 AGTTTCCCCTCGTCTCTCGGAGTGGAAGAATCCGGAAACTTGTTCTGGAATCAAAAGACA 217
Query 321 CGAACCTGAACCTAGCCGCT-GTTCCAGGCGGCTCAGAATCGTTCGAGCTTGCTGCAAAG 379
|||||| |||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 218 AGAACCTTAACCTAGCCG-TAGTTCCAGGCGGCTCAGAATCGTTCGAGCTCGCTGCAAAG 276
Query 380 TTCTGCTACGGCGTTGGCGTCCAATAT-AACTCGTCCAACATTGCGGCGCTGCGATGCGT 438
||||||||||||||||||||||||| | |||||||||||||||||||| |||| |||||
Sbjct 277 TTCTGCTACGGCGTTGGCGTCCAAT-TCAACTCGTCCAACATTGCGGCTTTGCGGTGCGT 335
Query 439 GGCTCATTACCTGGAGATGACAGAAGACTTGTCAGAGAAGAACCTCGAGGCGAGAACAGA 498
|||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 336 GGCTCATTACCTTGAGATGACAGAAGAGTTGTCGGAGAAGAACCTGGAGGCGAGAACAGA 395
Query 499 GGCCTACCTGAAAGACTCCAT-TTTCAATGACATATCGAATTCGATCACTGTTCTTCACT 557
||||||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 396 GGCCTACCTCAAAGACTCCATCTTT-AATGACATTTCGAATTCGATCACTGTTCTTCACT 454
Query 558 CCTGCGAGAGGCTACTGCCTGTAGCTGAAGAGATCAACCTCGTCGGGAGGCTGGTCAACG 617
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CCAGCGAGAGGCTACTGCCTGTAGCTGAAGAGATCAACCTCGTCGGGAGGCTGGTCAACG 514
Query 618 CAATCGCTGTAAACGCCTGCAAAGAACAGCTAGCCTCTGGTTTGCTCAAGCTTGATCAGA 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 CAATCGCTGTAAACGCCTGCAAAGAACAGCTAGCCTCTGGTTTGCTCAAGCTTGATCAGA 574
Query 678 GTTTCAGCTGCGGCGTCCCGGAGACTGCGAAACCTTGTGACTGGTGGGGTCGCTCTCTTC 737
||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 575 ATTTCAGCTGCGGCGTGCCGGAGACTGAGAAACCTTGTGACTGGTGGGGGCGCTCTCTTC 634
Query 738 CCATCCTCAAGCTTGATTTCTTCCAGAGAGTTCTCTCCGCCATGAAATCCAAAGGTCTCA 797
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 CCATCCTCAAGCTCGATTTCTTCCAGAGAGTTCTCTCCGCCATGAAATCCAAAGGTCTCA 694
Query 798 ATCACGACATTATCAGTGACATCCTTATGAGCTACGCTCGCAAATCACTGCAGATCATCA 857
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 695 ATCACGACATTATCAGTGACATCCTCATGAGCTACGCTCGCAAGTCACTGCAAATCATCA 754
Query 858 GAGAACCGAATCTCGTCAAATCAGATTCCGATCTTCAGAGGAAACAGCGAATCGTCCTTG 917
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 755 GAGAACCGAGTCTCGTCAAATCAGATTCCGATCTGCAGAGGAAACAGCGAATCGTCCTTG 814
Query 918 AAGCGGTCGTCGGGCTCCTCCCAACGCAAGCGAACAAAAGCTCGATTCCGATCTCGTTCC 977
|||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 815 AAGCGGTCGTGGGGCTCCTCCCAACGCAAGCGAACAAAAGCTCAATTCCGATATCGTTCC 874
Query 978 TCTCTAGCTTGTTGAAGACCGCTATAGGATCTGGCACCTCCGTCTCTTGCAGATCCGATC 1037
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 875 TCTCTAGCTTGTTGAAGACCGCTATAGGATCTGGAACCTCCGTCTCTTGCAGATCGGATC 934
Query 1038 TGGAGAGACGGATCAGCCACCTGCTCGACCAGGCCATCCTTGAAGACATCCTTATTCCGG 1097
||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||
Sbjct 935 TGGAGAGACGGATCAGCCACCAGCTCGACCAGGCGATCCTGGAAGACATCCTTATTCCGG 994
Query 1098 CGAACATCGGCGCCATGTACGACACCGACTCGGTGCAGAGGATTTTCTCAATGTTCTTGA 1157
||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| |||
Sbjct 995 CGAACATGGGCGCCATGTACGACACCGACTCGGTGCAGAGAATCTTCTCCATGTTCCTGA 1054
Query 1158 ACCTTGACGAGTGCGAGTACAGAGATGATGATGACGACGAGGA-G--G-AC--GCGGTGG 1211
|||||||||||||||| |||||||||||||| ||||||||||| | | | |||||||
Sbjct 1055 ACCTTGACGAGTGCGACTACAGAGATGATGACGACGACGAGGACGCTGGAGATGCGGTGG 1114
Query 1212 ACGAGAGCGAGATGGCCATGTACGATTTCGAGGGGGCTGAGTCACCGAAACAGAGCTCCA 1271
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1115 ACGAGAGCGAGATGGCGATTTACGATTTCGAGGGGGCTGAGTCTCCGAAACAGAGCTCCA 1174
Query 1272 TCTTCAAGGTGTCGAAGCTGATGGATAGTTATCTCGCTGAGGTGGCTCTGGACTCGAGCC 1331
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1175 TCTTCAAGGTGTCGAAGCTGATGGATAGTTATCTCGCTGAGGTGGCTCTCGACTCGAGCC 1234
Query 1332 TTCCTCCCTCCAAGTTTATAGCACTCGCAGAGCTTCTCCCTGACCATGCTCGCGTCGTCT 1391
| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1235 TCCCTCCCTCCAAATTCATAGCTCTCGCAGAGCTTCTCCCTGACCATGCTCGCGTCCTCT 1294
Query 1392 GCGATGGCCTCTACCGAGCCGTTGATATCTTCCTCAAGGTTCACCCCCACATGAAAGATT 1451
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1295 GCGATGGTCTCTACCGAGCCGTTGATATCTTCCTCAAGGTTCATCCCCACATGAAAGATT 1354
Query 1452 CGGAACGTTACCGTCTCTGCAAGACAGTCAGCTGTAAGAAACTGTCGCAGGACGCAAGCA 1511
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CAGAACGTTACCGTCTCTGCAAGACAGTCAGCTGTAAGAAACTGTCGCAGGACGCAAGCA 1414
Query 1512 GCCACGCGGCGCAAAACGAGAGACTTCCGGTTCAGATTGCGGTTCAAGTCCTGTTCTACG 1571
|||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1415 GCCATGCGGCGCAAAATGAGAGGCTTCCGGTTCAGATTGCTGTTCAAGTCCTGTTCTACG 1474
Query 1572 AACAGACACGGCTCAAGAACGCCATGACCAGCGGCGGTGGCACAGGCGGTTCGAACCAAA 1631
||||||||||||||||||||||||||||||||||||||||||| | | | | |||
Sbjct 1475 AACAGACACGGCTCAAGAACGCCATGACCAGCGGCGGTGGCAC-GA-G---C---C-AAA 1525
Query 1632 GCCAGTTCTTCTTGTTCCCAAACCGCTCGGGAAGCGGGATGGCAAGCGGAGCCATCTCGC 1691
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1526 GCCAGTTCTTCTTGTTCACAAACCGCTCGGGAAGCGGGATGGCAAGCGGAGCGATCTCGC 1585
Query 1692 CGAGGGACAACTATGCATCAGTGAGAAGAGAGAACAGAGAGCTGAGACTAGAGGTGGCCA 1751
|| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1586 CGCGGGACAACTATGCGTCAGTGAGAAGAGAGAACAGAGAGCTGAGACTGGAAGTGGCCA 1645
Query 1752 GGATGAGGATGAGGCTAACGGACCTGGAGAAAGATCATGTATCGATGAAGAGAGACTTCG 1811
||||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||
Sbjct 1646 GGATGAGGATGAGGCTAACGGACCTCGAGAAGGATCATGTTTCGATGAAGAAAGACTTCG 1705
Query 1812 TGAAGCCGCAGAGCAGGAGGAGGCGTTATGGAATGTTGAGGAAGCTCTCGAGAGGTCTGA 1871
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1706 TGAAGCCGCAGAGCAGGAGGAGGCGTTATGGAATGTTGAGGAAGCTCTCAAGAGGTCTGA 1765
Query 1872 ACAAGTTGAACGCAATCGTTTTGAGATTTAGGAGCAGCCAAAGTGTTGCCAGTAGCGGTA 1931
|||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 1766 ACAAGTTGAACGCAATCGTTTTGAGATTTAGGAGCAGCCAAAGT------A--AGC---A 1814
Query 1932 AAAAGCATACGGAGGAGAAAACGAATTCGGAAAGACGATTCATGTTTCAGAAGAGAAGAT 1991
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 -------TACGGAGGAGAAAACGAATTCGGAAAGACGATTCATGTTTCAGAAGAGAAGAT 1867
Query 1992 GTCACTCTGTTTCTTGA 2008
|||||||||||||||||
Sbjct 1868 GTCACTCTGTTTCTTGA 1884
Score = 257 bits (139), Expect = 2e-67
Identities = 155/162 (96%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 32 ATGGGTGTTGTTACTGTTCCTGAGTCTAATAAGCAAAGTGTTGCTGCTAAAAGAGCGTTT 91
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGTTGTTACTGTTCCTGAGTC---TAAGCAAAGTGTTGCTGCTAAAAGAGCGTTT 57
Query 92 CGTCCAAGTTCCAGTATCAGACACACTCCTCAATGGCCTGTCTCGGACGTTACGAGTGAC 151
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CGTCCAAGTTCCAGCATCAGACACACTCCTCAATGGCCTGTCTCGGACGTTACGAGTGAC 117
Query 152 TTAACCATTGAAGTCGGCTCTGCGACCTTTTCCCTTCACAAG 193
|||||||| |||||||||||||| | ||||||||||||||||
Sbjct 118 TTAACCATCGAAGTCGGCTCTGCCAGCTTTTCCCTTCACAAG 159
> Ahg497182 jgi|Araly1|497182|fgenesh2_kg.39__2__AT2G47860.1
Length=1884
Score = 2604 bits (1410), Expect = 0.0
Identities = 1648/1757 (94%), Gaps = 39/1757 (2%)
Strand=Plus/Plus
Query 261 AGTTTCCTCTCGTCTCTCGGAGTGGAAGAATCCGGAAACTTGTTCTGGAATCAAAAGACA 320
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 AGTTTCCCCTCGTCTCTCGGAGTGGAAGAATCCGGAAACTTGTTCTGGAATCAAAAGACA 217
Query 321 CGAACCTGAACCTAGCCGCT-GTTCCAGGCGGCTCAGAATCGTTCGAGCTTGCTGCAAAG 379
|||||| |||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 218 AGAACCTTAACCTAGCCG-TAGTTCCAGGCGGCTCAGAATCGTTCGAGCTCGCTGCAAAG 276
Query 380 TTCTGCTACGGCGTTGGCGTCCAATAT-AACTCGTCCAACATTGCGGCGCTGCGATGCGT 438
|||||||||||||| |||||||||| | |||||| ||||||||||||| |||| |||||
Sbjct 277 TTCTGCTACGGCGTCGGCGTCCAAT-TCAACTCGGCCAACATTGCGGCTTTGCGGTGCGT 335
Query 439 GGCTCATTACCTGGAGATGACAGAAGACTTGTCAGAGAAGAACCTCGAGGCGAGAACAGA 498
|||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 336 GGCTCATTACCTTGAGATGACAGAAGAGTTGTCGGAGAAGAACCTGGAGGCGAGAACAGA 395
Query 499 GGCCTACCTGAAAGACTCCAT-TTTCAATGACATATCGAATTCGATCACTGTTCTTCACT 557
||||||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 396 GGCCTACCTCAAAGACTCCATCTTT-AATGACATTTCGAATTCGATCACTGTTCTTCACT 454
Query 558 CCTGCGAGAGGCTACTGCCTGTAGCTGAAGAGATCAACCTCGTCGGGAGGCTGGTCAACG 617
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CCAGCGAGAGGCTACTGCCTGTAGCTGAAGAGATCAACCTCGTCGGGAGGCTGGTCAACG 514
Query 618 CAATCGCTGTAAACGCCTGCAAAGAACAGCTAGCCTCTGGTTTGCTCAAGCTTGATCAGA 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 CAATCGCTGTAAACGCCTGCAAAGAACAGCTAGCCTCTGGTTTGCTCAAGCTTGATCAGA 574
Query 678 GTTTCAGCTGCGGCGTCCCGGAGACTGCGAAACCTTGTGACTGGTGGGGTCGCTCTCTTC 737
||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 575 ATTTCAGCTGCGGCGTGCCGGAGACTGAGAAACCTTGTGACTGGTGGGGGCGCTCTCTTC 634
Query 738 CCATCCTCAAGCTTGATTTCTTCCAGAGAGTTCTCTCCGCCATGAAATCCAAAGGTCTCA 797
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 CCATCCTCAAGCTCGATTTCTTCCAGAGAGTTCTCTCCGCCATGAAATCCAAAGGTCTCA 694
Query 798 ATCACGACATTATCAGTGACATCCTTATGAGCTACGCTCGCAAATCACTGCAGATCATCA 857
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 695 ATCACGACATTATCAGTGACATCCTCATGAGCTACGCTCGCAAGTCACTGCAAATCATCA 754
Query 858 GAGAACCGAATCTCGTCAAATCAGATTCCGATCTTCAGAGGAAACAGCGAATCGTCCTTG 917
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 755 GAGAACCGAGTCTCGTCAAATCAGATTCCGATCTGCAGAGGAAACAGCGAATCGTCCTTG 814
Query 918 AAGCGGTCGTCGGGCTCCTCCCAACGCAAGCGAACAAAAGCTCGATTCCGATCTCGTTCC 977
|||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 815 AAGCGGTCGTGGGGCTCCTCCCAACGCAAGCGAACAAAAGCTCAATTCCGATATCGTTCC 874
Query 978 TCTCTAGCTTGTTGAAGACCGCTATAGGATCTGGCACCTCCGTCTCTTGCAGATCCGATC 1037
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 875 TCTCTAGCTTGTTGAAGACCGCTATAGGATCTGGAACCTCCGTCTCTTGCAGATCGGATC 934
Query 1038 TGGAGAGACGGATCAGCCACCTGCTCGACCAGGCCATCCTTGAAGACATCCTTATTCCGG 1097
||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||
Sbjct 935 TGGAGAGACGGATCAGCCACCAGCTCGACCAGGCGATCCTGGAAGACATCCTTATTCCGG 994
Query 1098 CGAACATCGGCGCCATGTACGACACCGACTCGGTGCAGAGGATTTTCTCAATGTTCTTGA 1157
||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| |||
Sbjct 995 CGAACATGGGCGCCATGTACGACACCGACTCGGTGCAGAGAATCTTCTCCATGTTCCTGA 1054
Query 1158 ACCTTGACGAGTGCGAGTACAGAGATGATGATGACGACGAGGA-G--G-AC--GCGGTGG 1211
|||||||||||||||| |||||||||||||| ||||||||||| | | | |||||||
Sbjct 1055 ACCTTGACGAGTGCGACTACAGAGATGATGACGACGACGAGGACGCTGGAGATGCGGTGG 1114
Query 1212 ACGAGAGCGAGATGGCCATGTACGATTTCGAGGGGGCTGAGTCACCGAAACAGAGCTCCA 1271
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1115 ACGAGAGCGAGATGGCGATTTACGATTTCGAGGGGGCTGAGTCTCCGAAACAGAGCTCCA 1174
Query 1272 TCTTCAAGGTGTCGAAGCTGATGGATAGTTATCTCGCTGAGGTGGCTCTGGACTCGAGCC 1331
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1175 TCTTCAAGGTGTCGAAGCTGATGGATAGTTATCTCGCTGAGGTGGCTCTCGACTCGAGCC 1234
Query 1332 TTCCTCCCTCCAAGTTTATAGCACTCGCAGAGCTTCTCCCTGACCATGCTCGCGTCGTCT 1391
| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1235 TCCCTCCCTCCAAATTCATAGCTCTCGCAGAGCTTCTCCCTGACCATGCTCGCGTCCTCT 1294
Query 1392 GCGATGGCCTCTACCGAGCCGTTGATATCTTCCTCAAGGTTCACCCCCACATGAAAGATT 1451
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1295 GCGATGGTCTCTACCGAGCCGTTGATATCTTCCTCAAGGTTCATCCCCACATGAAAGATT 1354
Query 1452 CGGAACGTTACCGTCTCTGCAAGACAGTCAGCTGTAAGAAACTGTCGCAGGACGCAAGCA 1511
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CAGAACGTTACCGTCTCTGCAAGACAGTCAGCTGTAAGAAACTGTCGCAGGACGCAAGCA 1414
Query 1512 GCCACGCGGCGCAAAACGAGAGACTTCCGGTTCAGATTGCGGTTCAAGTCCTGTTCTACG 1571
|||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1415 GCCATGCGGCGCAAAATGAGAGGCTTCCGGTTCAGATTGCTGTTCAAGTCCTGTTCTACG 1474
Query 1572 AACAGACACGGCTCAAGAACGCCATGACCAGCGGCGGTGGCACAGGCGGTTCGAACCAAA 1631
||||||||||||||||||||||||||||||||||||||||||| | | | | |||
Sbjct 1475 AACAGACACGGCTCAAGAACGCCATGACCAGCGGCGGTGGCAC-GA-G---C---C-AAA 1525
Query 1632 GCCAGTTCTTCTTGTTCCCAAACCGCTCGGGAAGCGGGATGGCAAGCGGAGCCATCTCGC 1691
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1526 GCCAGTTCTTCTTGTTCACAAACCGCTCGGGAAGCGGGATGGCAAGCGGAGCGATCTCGC 1585
Query 1692 CGAGGGACAACTATGCATCAGTGAGAAGAGAGAACAGAGAGCTGAGACTAGAGGTGGCCA 1751
|| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1586 CGCGGGACAACTATGCGTCAGTGAGAAGAGAGAACAGAGAGCTGAGACTGGAAGTGGCCA 1645
Query 1752 GGATGAGGATGAGGCTAACGGACCTGGAGAAAGATCATGTATCGATGAAGAGAGACTTCG 1811
||||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||
Sbjct 1646 GGATGAGGATGAGGCTAACGGACCTCGAGAAGGATCATGTTTCGATGAAGAAAGACTTCG 1705
Query 1812 TGAAGCCGCAGAGCAGGAGGAGGCGTTATGGAATGTTGAGGAAGCTCTCGAGAGGTCTGA 1871
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1706 TGAAGCCGCAGAGCAGGAGGAGGCGTTATGGAATGTTGAGGAAGCTCTCAAGAGGTCTGA 1765
Query 1872 ACAAGTTGAACGCAATCGTTTTGAGATTTAGGAGCAGCCAAAGTGTTGCCAGTAGCGGTA 1931
|||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 1766 ACAAGTTGAACGCAATCGTTTTGAGATTTAGGAGCAGCCAAAGT------A--AGC---A 1814
Query 1932 AAAAGCATACGGAGGAGAAAACGAATTCGGAAAGACGATTCATGTTTCAGAAGAGAAGAT 1991
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 -------TACGGAGGAGAAAACGAATTCGGAAAGACGATTCATGTTTCAGAAGAGAAGAT 1867
Query 1992 GTCACTCTGTTTCTTGA 2008
|||||||||||||||||
Sbjct 1868 GTCACTCTGTTTCTTGA 1884
Score = 257 bits (139), Expect = 2e-67
Identities = 155/162 (96%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 32 ATGGGTGTTGTTACTGTTCCTGAGTCTAATAAGCAAAGTGTTGCTGCTAAAAGAGCGTTT 91
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGTTGTTACTGTTCCTGAGTC---TAAGCAAAGTGTTGCTGCTAAAAGAGCGTTT 57
Query 92 CGTCCAAGTTCCAGTATCAGACACACTCCTCAATGGCCTGTCTCGGACGTTACGAGTGAC 151
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CGTCCAAGTTCCAGCATCAGACACACTCCTCAATGGCCTGTCTCGGACGTTACGAGTGAC 117
Query 152 TTAACCATTGAAGTCGGCTCTGCGACCTTTTCCCTTCACAAG 193
|||||||| |||||||||||||| | ||||||||||||||||
Sbjct 118 TTAACCATCGAAGTCGGCTCTGCCAGCTTTTCCCTTCACAAG 159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79456251070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5