BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47870.1
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952137 jgi|Araly1|952137|scaffold_3900003.1 488 9e-138
Ahg935775 jgi|Araly1|935775|scaffold_403763.1 488 9e-138
> Ahg952137 jgi|Araly1|952137|scaffold_3900003.1
Length=354
Score = 488 bits (264), Expect = 9e-138
Identities = 296/312 (95%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 1 ATGGAACGAGTAAGAGATTTGGCATCGGAGAAGGCGGCTGTGATATTCACGAAGAGCTCG 60
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 22 ATGGAACGAGTAAGAGATTTGGCATCGAAGAAGGCGGCAGTGATATTCACGAAGAGCTCG 81
Query 61 TGTTGCATGTGTCATAGCATCAAGACTCTCTTCTACGAACTCGGGGCGAGTCCTGCCATC 120
|||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||
Sbjct 82 TGTTGCATGTGTCATAGCATTAAGACCCTCTTCTACGAGCTCGGGGCAAGTCCTGCGATC 141
Query 121 CATGAGCTTGACAAGGACCCGCAAGGCCCTGACATGGAACGGGCCCTCTTCCGGGTATTC 180
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 142 CATGAGCTTGACAAGGACCCACAAGGCCGTGACATGGAACGGGCCCTCTTCCGGGTATTT 201
Query 181 GGGTCTAACCCTGCTGTCCCTGCGGTTTTCGTAGGAGGAAGGTACGTCGGCTCAGCTAAA 240
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 202 GGGTCCAACCCTGCTGTCCCAGCGGTTTTCGTAGGAGGGAGGTACGTCGGCTCAGCTAAA 261
Query 241 GACGTCATCTCCTTCCACGTGGATGGCTCCCTCAAGCAGATGTTAAAGGCCTCTAACGCC 300
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||
Sbjct 262 GACGTCATCTCCTTCCACGTGGATGGCTCTCTCAAGCAGATGTTAAAGGACTCTAAAGCC 321
Query 301 ATATGGTTGTGA 312
||||||||||||
Sbjct 322 ATATGGTTGTGA 333
> Ahg935775 jgi|Araly1|935775|scaffold_403763.1
Length=354
Score = 488 bits (264), Expect = 9e-138
Identities = 296/312 (95%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 1 ATGGAACGAGTAAGAGATTTGGCATCGGAGAAGGCGGCTGTGATATTCACGAAGAGCTCG 60
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 22 ATGGAACGAGTAAGAGATTTGGCATCGAAGAAGGCGGCAGTGATATTCACGAAGAGCTCG 81
Query 61 TGTTGCATGTGTCATAGCATCAAGACTCTCTTCTACGAACTCGGGGCGAGTCCTGCCATC 120
|||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||
Sbjct 82 TGTTGCATGTGTCATAGCATTAAGACACTCTTCTACGAGCTCGGGGCAAGTCCTGCGATC 141
Query 121 CATGAGCTTGACAAGGACCCGCAAGGCCCTGACATGGAACGGGCCCTCTTCCGGGTATTC 180
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 142 CATGAGCTTGACAAGGACCCACAAGGCCGTGACATGGAACGGGCCCTCTTCCGGGTATTT 201
Query 181 GGGTCTAACCCTGCTGTCCCTGCGGTTTTCGTAGGAGGAAGGTACGTCGGCTCAGCTAAA 240
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 202 GGGTCCAACCCTGCTGTCCCAGCGGTTTTCGTAGGAGGGAGGTACGTCGGCTCAGCTAAA 261
Query 241 GACGTCATCTCCTTCCACGTGGATGGCTCCCTCAAGCAGATGTTAAAGGCCTCTAACGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 262 GACGTCATCTCCTTCCACGTGGATGGCTCCCTCAAGCAGATGTTAAAGGATTCTAAAGCC 321
Query 301 ATATGGTTGTGA 312
||||||||||||
Sbjct 322 ATATGGTTGTGA 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10988809632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5