BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47880.1
Length=632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952138 jgi|Araly1|952138|scaffold_3900004.1 603 6e-172
Ahg935776 jgi|Araly1|935776|scaffold_403764.1 603 6e-172
> Ahg952138 jgi|Araly1|952138|scaffold_3900004.1
Length=350
Score = 603 bits (326), Expect = 6e-172
Identities = 343/351 (98%), Gaps = 1/351 (0%)
Strand=Plus/Plus
Query 65 TCTTCAGACTTCTGAGGATCATGGACAAAGTGATGAGAATGTCTTCAGAGAAAGGAGTGG 124
|||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1 TCTTCAGATTTCTGAGGATCATGGACAAGGTGATGAGAATGTCGTCAGAGAAAGGAGTGG 60
Query 125 TGATCTTCACGAAGAGCTCATGTTGTCTCTGCTACGCCGTTCAAATCCTGTTCCGTGACC 184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TGATCTTCACGAAGAGCTCATGTTGTCTCTGCTACGCCGTTCAGATCCTGTTCCGTGACC 120
Query 185 TTAGGGTTCAACCAACCATCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTAGGGTTCAACCAACCATCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGA 180
Query 245 AGGCTCTTCTCCGGCTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGC 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGCTCTTCTCCGGCTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGC 240
Query 305 TTGTTGGCTCCACCAATGAAGTCATGTCCCTTCACCTTAGTGGCTCTCTTGTCCCATTGA 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 241 TTGTTGGCTCCACCAATGAAGTCATGTCCCTTCACCTTAGTGGCTCTCTCGTCCCCTTGA 300
Query 365 TCAAACCCTATCAGTCCATCCTTTACTAGCAAAATTAAACCAACTCAATAT 415
||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 301 TCAAACCCTATCAGTCCATCCTTTACTAGCAAA-TCAAACCAACTCAATAT 350
> Ahg935776 jgi|Araly1|935776|scaffold_403764.1
Length=350
Score = 603 bits (326), Expect = 6e-172
Identities = 343/351 (98%), Gaps = 1/351 (0%)
Strand=Plus/Plus
Query 65 TCTTCAGACTTCTGAGGATCATGGACAAAGTGATGAGAATGTCTTCAGAGAAAGGAGTGG 124
|||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1 TCTTCAGATTTCTGAGGATCATGGACAAGGTGATGAGAATGTCGTCAGAGAAAGGAGTGG 60
Query 125 TGATCTTCACGAAGAGCTCATGTTGTCTCTGCTACGCCGTTCAAATCCTGTTCCGTGACC 184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TGATCTTCACGAAGAGCTCATGTTGTCTCTGCTACGCCGTTCAGATCCTGTTCCGTGACC 120
Query 185 TTAGGGTTCAACCAACCATCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTAGGGTTCAACCAACCATCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGA 180
Query 245 AGGCTCTTCTCCGGCTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGC 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGCTCTTCTCCGGCTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGC 240
Query 305 TTGTTGGCTCCACCAATGAAGTCATGTCCCTTCACCTTAGTGGCTCTCTTGTCCCATTGA 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 241 TTGTTGGCTCCACCAATGAAGTCATGTCCCTTCACCTTAGTGGCTCTCTCGTCCCCTTGA 300
Query 365 TCAAACCCTATCAGTCCATCCTTTACTAGCAAAATTAAACCAACTCAATAT 415
||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 301 TCAAACCCTATCAGTCCATCCTTTACTAGCAAA-TCAAACCAACTCAATAT 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23140610619
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5