BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47890.1
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483978 jgi|Araly1|483978|fgenesh2_kg.4__3038__AT2G47890.1 1779 0.0
> Ahg483978 jgi|Araly1|483978|fgenesh2_kg.4__3038__AT2G47890.1
Length=1391
Score = 1779 bits (963), Expect = 0.0
Identities = 1299/1445 (90%), Gaps = 87/1445 (6%)
Strand=Plus/Plus
Query 2 TAAAGAAAGGCACGGGAAGGTGAAGAGAG---T-G-TA--G-GTTTCCAGCTTCTTCCCC 53
||||||||||||||||||||||||||||| | | || | ||||||||||||||||||
Sbjct 1 TAAAGAAAGGCACGGGAAGGTGAAGAGAGTACTAGCTAGTGTGTTTCCAGCTTCTTCCCC 60
Query 54 AAGAAATAAAATGTATTTGACTTTGTCTAAGCAAATATGTCGTCACTTTAACGTCATTCA 113
||||||| || | | |||||||||||||||| || ||| ||||||||| |||||| | |
Sbjct 61 AAGAAAT--AA-G-AATTGACTTTGTCTAAGC-AA-ATGGCGTCACTTTGACGTCA-T-A 112
Query 114 TTACCTAGAATGCAATTAAGATATGGCTTTTACATAAGCCACCAAATTTGGTTTTGTTGC 173
|||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 113 --ACCTAGAATGCAATTAAGATATGGCTTTTACATAAGCCACCAAAATT-G----GTT-- 163
Query 174 CCCAAAATATCCCAAGAAAAGATCAACTTCTTCTTCTTACCAAAACTGTCGGCGTCGTCT 233
|||||||||||||| ||| | ||||||||||||||||||||| |||||||||||||||
Sbjct 164 --CAAAATATCCCAAG-AAA-A-CAACTTCTTCTTCTTACCAAATCTGTCGGCGTCGTCT 218
Query 234 C--CTCTAAGCTCCTCCCATGGAAGCAGAAGAAGGTCATCAG---CGTGACCGCCTCTGC 288
| ||||||||||||| ||||||| |||||||||||||||| ||| |||||||||||
Sbjct 219 CTAATCTAAGCTCCTCCTATGGAAGAAGAAGAAGGTCATCAGCAACGTCACCGCCTCTGC 278
Query 289 GACTATTGCGACTCCTCCGTGGCTCTTGTCTACTGCAAAGCTGACTCCGCCAAGCTCTGC 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GACTATTGCGACTCCTCCGTGGCTCTTGTCTACTGCAAAGCTGACTCCGCCAAGCTCTGT 338
Query 349 CTCGCCTGCGACAAGCAAGTCCACGTCGCCAACCAACTCTTCGCCAAACACTTCAGGTCA 408
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 339 CTCGCCTGCGACAAGCAAGTCCACGTCACCAACCAACTCTTCGCCAAACACTTCAGGTCA 398
Query 409 CTTCTCTGCGACTCCTGCAACGAATCTCCCTCTTCCCTTTTCTGCGAGACTGAAAGGTCT 468
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 399 CTTCTCTGCGACTCCTGCCACGACTCTCCCTCTTCCCTTTTCTGCGAGACGGAAAGGTCT 458
Query 469 GTTCTTTGCCAGAACTGCGACTGGCAACACCACACCGCCTCTTCCTCCCTTCATAGCCGC 528
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 459 GTTCTTTGCCAGAACTGCGACTGGCAACACCACACCGCCTCTTCCTCCCTCCATAGCCGC 518
Query 529 AGACCCTTTGAAGGATTTACCGGCTGTCCCTCCGTGCCTGAGTTGCTGGCCATCGTTGGC 588
|||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 519 AGACCCTTTGAAGGTTTTACCGGCTGTCCCTCCGTGCCTGAGTTGTTGGCAATCGTTGGC 578
Query 589 CTCGATGACCTCACTCTCGATTCCGGATTGCTTTGGGAGTCACCTGAGATCGTTAGCCTC 648
||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||
Sbjct 579 CTCGATGACCTCACTCTCGATTCCGGATTGCTTTGGGAGTCCCCGGAGATCGCTAGCCTC 638
Query 649 AACGACCTTATTGTTTCGGGCGGGTCGGGTACTCATAACTTCCGGGCCACGGATGTTCCT 708
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 639 AACGACCTTGTTGTTTCGGGCGGGTCTGGTACTCATAACTTCCGGGCCACGGATGTTCCT 698
Query 709 CCTCTGCCTAAGAATCGTCACGCCACCTGCGGGAAATACAAAGATGAGATGATCCGACAG 768
|||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||
Sbjct 699 CCTCTGCCTAAGAATCGTCACGCCACCTGCGGTATATACAAAGCCGAGATGATCCGCCAG 758
Query 769 CTCCGTGGACTATCCAGATCTGAGCCTG-GTTGTCTGAAATTTGAAACCCCAGATGCTGA 827
|||||||||||| | ||||| ||| | | ||||||||||||| |||||||| || |||||
Sbjct 759 CTCCGTGGACTAGCGAGATCCGAG-CGGAGTTGTCTGAAATTCGAAACCCCGGAAGCTGA 817
Query 828 GATCGATGCCGGGTTCCAATTCCTAGCGCCGGATTTGTTTTCTACATGCGAGCTGGAGAG 887
||| |||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 818 GATGGATGCCGGATTCCAGTTCCTGGCGCCGGATTTGTTTTCTACAAGCGAGCTGGAGAG 877
Query 888 TGGACTGAAATGGTTCGATCAGCAAGATCATGAGGACTTTCCATATTGCTCTCTGCTAAA 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TGGACTGAAATGGTTCGATCAGCAAGATCATGAGGACTTTCCATATTGCTCTCTGCTAAA 937
Query 948 GAACTTGTCGGAGTCAGATGAGAAACCTGAGAATGTAGACCGAGAGTCATCGGTGATGGT 1007
||||| ||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 938 GAACTCGTCAGAGTCAGATGAGAAACCTGAGAATGTAGACCGAGAGTC-T---T------ 987
Query 1008 TCCCGTTTCCGGCTGCTTAAACCGATGTGAGGAAGAGACTGTGATGGTTCCGGTTAT-CA 1066
| || | || || | || | ||||| || ||||||||| || ||| | ||
Sbjct 988 -C---TT-C-GG-TGATG-----GA-G-GAGGA-GAT--TGTGATGGTGCCCGTT-TGCA 1029
Query 1067 CTAGTACAAGGTCGATGACACATGAGATCAACAGTCTTGAGAGGAACTCTGCTCTCTCTC 1126
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CTAGTACAAGGTCGACGACACATGAGATCAACAGTCTTGAGAGGAACTCTGCTCTCTCTC 1089
Query 1127 GCTACAAAGAAAAGAAGAAGTCTCGAAGGTACGAGAAACACATCAGGTATGAATCACGCA 1186
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GCTACAAAGAAAAGAAGAAATCTCGAAGGTACGAGAAACACATCAGGTATGAATCACGCA 1149
Query 1187 AGGTTCGTGCAGAAAGCAGGACAAGAATCAGGGGACGTTTCGCCAAGGCAGCAGATCCAT 1246
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 AGGTTCGAGCAGAAAGCAGGACAAGAATCAGGGGACGTTTCGCCAAGGCAGCAGATCCAT 1209
Query 1247 GAATGATGATG---AGGTTACTTTGATAATCAAAAAT--CTTTTGTATTA--A-TCGAAT 1298
|||||||| || | |||||||||||| |||||| ||||||||||| | | ||||
Sbjct 1210 GAATGATG-TGTCCAA-TTACTTTGATAACCAAAAAGAACTTTTGTATTATCAATGGAAT 1267
Query 1299 CATATAGTG-TGT--ATGATCAGATAAGTTTTTGTA-TTCTAAGCTTAGGAGTT-ATCAC 1353
|||||| | ||| ||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 1268 CATATAATAATGTCTATGATCAGATAAGTTTTTGTAATTCTAAGCTTAGGAGTTTACCAC 1327
Query 1354 TGTATATCGACCACACTCTCAAAATTGTCACTTAAGAA----TA-GttttttttttGTTT 1408
||||||||||||||||||||||| | |||||||||||| | |||||||||||||||
Sbjct 1328 TGTATATCGACCACACTCTCAAA-TAGTCACTTAAGAAACCGTCTGTTTTTTTTTTGTTT 1386
Query 1409 TGCCT 1413
|||||
Sbjct 1387 TGCCT 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5