BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G47895.1

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935778 jgi|Araly1|935778|scaffold_403766.1                        307    4e-83


> Ahg935778 jgi|Araly1|935778|scaffold_403766.1
Length=293

 Score =  307 bits (166),  Expect = 4e-83
 Identities = 195/209 (93%), Gaps = 2/209 (1%)
 Strand=Plus/Plus

Query  77   ACCCGGAGGACCAGGGTTCTTGCCACCGGGAGGACCAGGCTTCTTCCCACCCATTGGTGG  136
            ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  86   ACCTGGAGGACCAGGGTTCTTGCCACCGGGAGGACCCGGCTTCTTCCCACCCATTGGTGG  145

Query  137  TTTCTTTTCTGGGTTCTCCGACATGATATGTTCCTGTCTATCTTGTCTGTGCTGCTGCTG  196
            |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct  146  TTTCTTTTCTGGGTTCTCAGACATGATATGTTCCTGTCTATCTTGCCTGTGCTGCTGCTG  205

Query  197  GCTGCTACGAGATTGCTTTGGCGGCCCACCGCCACAAGGACCGCCACTTCTGCCACCCTA  256
            ||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||
Sbjct  206  GCTGCTACGAGATTGCTTTGGCGGCTCACCACCACAAGGACCGCCACTTCTTCCTCCCTA  265

Query  257  TTATTGACCACATCT-GACTCCATTGGTC  284
            | ||||| ||||||| | |||  ||||||
Sbjct  266  TAATTGATCACATCTAG-CTCTTTTGGTC  293



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14995146477


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5