BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47900.3
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322431 jgi|Araly1|322431|fgenesh1_pm.C_scaffold_4002488 1973 0.0
> Ahg322431 jgi|Araly1|322431|fgenesh1_pm.C_scaffold_4002488
Length=1224
Score = 1973 bits (1068), Expect = 0.0
Identities = 1174/1226 (96%), Gaps = 4/1226 (0%)
Strand=Plus/Plus
Query 467 ATGTCCTTCAAGAGTCTCATTCAGGACATGAGAGGAGAGCTTGGGAGTATATCCAGAAAG 526
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1 ATGTCCTTCAAGAGTCTCATTCAAGACATGAGAGGAGAGCTTGGGAGTATTTCTAGAAAG 60
Query 527 GGATTCGATGTCAGATTCGGGTATGGTAGATCCAGGTCTCAACGTGTTGTTCAGGATACT 586
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGATTCGATGTCAGATTCGGCTATGGTAGATCCAGGTCTCAACGTGTTGTTCAGGATACT 120
Query 587 TCTGTTCCTGTTGATGCTTTCAAGCAGAGCTGCTGGGCTAGTATGCCTCCGGAGCTCCTG 646
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TCTGTTCCTGTTGATGCTTTCAAGCAGAGCTGCTGGGCTAACATGCCTCCGGAGCTCCTC 180
Query 647 AGAGATGTTCTTATGAGGATTGAGCAATCCGAAGACACTTGGCCGTCTAGGAAA-AATGT 705
|| |||||||| ||||||||||||| |||||||||||||||||| |||| |||| |||||
Sbjct 181 AGGGATGTTCTGATGAGGATTGAGCTATCCGAAGACACTTGGCCCTCTA-GAAAGAATGT 239
Query 706 TGTTTCTTGCGCTGGTGTCTGCAGGAACTGGCGAGAAATCGTCAAAGAGATCGTCAGAGT 765
||||||||||||||||||||||||||||||||| || |||||||| ||||| |||| |||
Sbjct 240 TGTTTCTTGCGCTGGTGTCTGCAGGAACTGGCGTGAGATCGTCAAGGAGATTGTCAAAGT 299
Query 766 TCCTGAGCTTTCTAGCAAACTCACTTTTCCTATCTCCCTCAAACAGCCGGGTCCTAGAGG 825
||||||| ||||||||||| | ||||||||||||||||| |||||||||||||| || ||
Sbjct 300 TCCTGAGGTTTCTAGCAAATTGACTTTTCCTATCTCCCTGAAACAGCCGGGTCCAAGGGG 359
Query 826 ATCACTTGTTCAATGCTATATTATGAGAAACCGCAGCAATCAAACCTACTATCTATACCT 885
|||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 360 ATCACTTGTTCAGTGCTATATTATGAGAAACCGCAGCAATCAAACCTACTACCTGTACCT 419
Query 886 CGGGTTAAACCAAGCAGCAGCTTCAAATGATGATGGAAAGTTCCTTCTTGCTGCCAAGAG 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGGGTTAAACCAAGCAGCAGCTTCAAATGATGATGGAAAGTTCCTTCTTGCTGCCAAGAG 479
Query 946 GTTTCGGAGGCCAACTTGCACTGACTACATCATCTCCTTAAACTGCGATGATGTCTCTC- 1004
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 GTTTCGCAGGCCAACTTGCACTGACTACATCATCTCCTTAAACTGCGATGATGTCTC-CA 538
Query 1005 GAGGAAGCAATACCTATATCGGAAAGCTTAGATCTAACTTTCTGGGGACCAAGTTCACTG 1064
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 GAGGAAGCAATACCTATATCGGAAAGCTAAGATCTAACTTTCTGGGGACCAAGTTCACTG 598
Query 1065 TCTATGACGCTCAGCCGACGAATCCTGGAACTCAGGTTACCAGAACCCGTTCAAGCAGAC 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTATGACGCTCAGCCGACGAATCCTGGAACTCAGGTTACCAGAACCCGTTCAAGCAGAC 658
Query 1125 TTCTCAGTTTGAAACAAGTGAGCCCGAGAATTCCATCTGGCAACTATCCTGTAGCACATA 1184
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 659 TTCTCAGTCTGAAACAAGTGAGCCCAAGAATTCCATCTGGCAACTATCCTGTAGCACACA 718
Query 1185 TCTCATATGAGCTTAACGTCTTGGGTTCCAGAGGACCGAGGAGGATGCAGTGTGTCATGG 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCTCATATGAGCTTAACGTCTTGGGTTCCAGAGGACCGAGGAGGATGCAGTGTGTCATGG 778
Query 1245 ATGCCATCCCTGCATCAGCTGTAGAACCTGGAGGAACAGCTCCAACTCAGACGGAACTTG 1304
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGCCATCCCTGCATCAGCTGTTGAACCTGGAGGAACAGCTCCAACTCAGACGGAACTTA 838
Query 1305 TCCATAGCAATCTTGATAGTTTCCCCTCATTCTCCTTCTTCAGGTCGAAATCAATTCGTG 1364
|||| ||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 839 TCCACAGCAATCTTGATAATTTCCCGTCTTTCTCCTTCTTCAGGTCGAAATCAATTCGTG 898
Query 1365 CAGAGAGTCTCCCTTCTGGTCCATCATCTGCTGCTCAGAAGGAAGGACTGCTTGTCCTGA 1424
|||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 899 CAGAGAGTCTTTCTTCTGGTCCAGCGTCTGCTGCTCAGAAGGAAGGACTGCTTGTCCTGA 958
Query 1425 AAAACAAAGCGCCCAGATGGCACGAACAGCTCCAGTGCTGGTGCCTCAACTTCAATGGGA 1484
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGAACAAAGCGCCTAGATGGCACGAACAGCTCCAGTGCTGGTGCCTCAACTTCAATGGGA 1018
Query 1485 GAGTCACAGTTGCTTCCGTCAAAAACTTTCAGCTGGTAGCTGCTCCTGAGAATGGACCTG 1544
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAGTCACTGTTGCTTCGGTCAAAAACTTTCAGCTGGTAGCTGCTCCTGAGAATGGACCTG 1078
Query 1545 CAGGACCTGAGCACGAAAACGTGATTCTCCAGTTTGGAAAAGTCGGAAAAGATGTGTTCA 1604
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1079 CAGGACCTGAGCACGAAAACGTGATTCTCCAGTTCGGGAAAGTCGGAAAAGATGTGTTCA 1138
Query 1605 CAATGGATTATCAGTACCCTATCTCTGCCTTCCAGGCCTTCACCATTTGCCTCAGCAGTT 1664
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1139 CAATGGATTATCAGTACCCAATCTCTGCCTTCCAGGCCTTCACCATTTGCCTTAGCAGTT 1198
Query 1665 TCGACACCAAGATAGCATGTGAATGA 1690
||||||||||||||||||||||||||
Sbjct 1199 TCGACACCAAGATAGCATGTGAATGA 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73780804565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5