BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47910.1
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483982 jgi|Araly1|483982|fgenesh2_kg.4__3042__AT2G47910.1 929 0.0
> Ahg483982 jgi|Araly1|483982|fgenesh2_kg.4__3042__AT2G47910.1
Length=713
Score = 929 bits (503), Expect = 0.0
Identities = 670/743 (90%), Gaps = 41/743 (6%)
Strand=Plus/Plus
Query 2 AGCGTCTGTGAATGGCAACAAAGGCAGTTCTTCTCCCGTGGCTTATCCCATCGCCGAGAC 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AGCGTCTGTGAATGGCAACAAAGGCAGGTCTTCTCCCGTGGCTTATCCCATCGCCGAGAC 60
Query 62 ACGTATCGCTGTTCCCAGTGGTTCAATTGCCGGCGTTGGAGACCGCCGGGTGGTGTGTAA 121
|||| ||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 61 ACGTGTCGCTGTTCCCAGTGGTTCAATTGCCGGC---GG-GA--------TGGTGTGTAA 108
Query 122 GAAAGAGGAGGGCAGAAGACGTAGCAGTCTCCGTCGCCTTCAATCCTTCTGGCAATTTCG 181
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 GAAAGAGGAGAGCAGCGGACGTAGCAGTCTCCGTCGCCTTCAATCCTTCTGGCAATTTCG 168
Query 182 ACATCTCTGCCTTCGAGAATGACCAAGATTCAGATAAAGTGGAACCTCCGATGCCTCCAA 241
||| | | || || || || ||||||||||||||||||| ||||||| |
Sbjct 169 ACA----T--C-TC-----TG-CC--GA---AGATAAAGTGGAACCTCCGCTGCCTCCGA 210
Query 242 CGACCGGCCGGTACGAAGTAGTGATCGACAACGACTCAATTGGGCGGCTTGACCTATCCC 301
|||| || ||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 211 CGACGGGACGGTACGAAGTAGTGGTCGACAACGACTCAATTGGGAGGCTTGACCTATCCC 270
Query 302 CGTTTCAGAGAGCCATCGGCATAACCTCGCCTGATGATTTTGGTGTAGCTGAACCAAAAC 361
||||||||||||||| |||||||| ||| || || | ||||||||||||||
Sbjct 271 CGTTTCAGAGAGCCACCGGCATAAGCTCACC--------TTCCT-CAGCTGAACCAAAAC 321
Query 362 GGTATTTGGATCGAACCATCGGATTCACCATCAATTACAAGAGAGAAGACCCCGGGGATC 421
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 322 GGTATTTGGATCGAACCATCGGATTCACCATCAACTACAGGAGAGAAGATCCCGGGGATC 381
Query 422 CGCGGGAGCTGTCAGAGTACCCGGACGTAAGACTATGGTTCGTGAGGCTCGACGCGATGT 481
|||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||
Sbjct 382 CGCGGGAGCTGTCAGAGTACCCAGACATAAGACTGTGGTTCGTGAGGCTGGACGCGATGT 441
Query 482 ACCCTTGGCTGCCTCTGCTGCTGGACTGGCGAGCTGGAGAACTTGCTCGATACGCAGCCA 541
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 442 ACCCATGGCTGCCTCTGCTGCTGGACTGGCGAGCTGGAGAGCTTGCTCGATATGCGGCCA 501
Query 542 TGTTAGTGCCGCACCAGATGAGCTTGAGAATGGGTGTCGTTTTCAATCCGGAGGCGTTGG 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TGTTAGTGCCGCACCAGATGAGCTTGAGAATGGGTGTCGTTTTCAATCCGGAGGCGTTGG 561
Query 602 AGCTTTTCGTAATGAACAAAGTGTTTGTGGTTTATCCGTGGCTGAAACGGCACGGCGTCC 661
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AGCTTTTCGTGATGAACAAGGTGTTTGTGGTTTATCCGTGGCTGAAACGGCACGGCGTCC 621
Query 662 C-AAAGCCCAGGTTGAAGACGAGCGACATGGCCAGGATGCTCGGATTCGGTATCGGCGAT 720
| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 622 CCAAA-CCCAGGTTGAAGACGAGCGACATGGCCAGGATGCTCGGCTTCGGTATCGGCGAT 680
Query 721 GAGCTCTTCGACTTGATCGATCA 743
||||||||||||||| |||||||
Sbjct 681 GAGCTCTTCGACTTGGTCGATCA 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35759296146
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5