BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47920.1
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935782 jgi|Araly1|935782|scaffold_403770.1 917 0.0
> Ahg935782 jgi|Araly1|935782|scaffold_403770.1
Length=723
Score = 917 bits (496), Expect = 0.0
Identities = 651/722 (90%), Gaps = 26/722 (4%)
Strand=Plus/Plus
Query 104 aaaaagaaatggttagagaagaggagaaatcgagaTGGTGGTGGTTCGAGAGCCACAAGA 163
||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 14 AAAAAAAAATGGTGAGAGAAGAGGAGAAATCGAGATGGTGGTGGTTCGAGAGTCACAAGA 73
Query 164 GCTCCAAACATTCTCAATGGCTTCAATCAACACTCGCTGAGATTGATGCAAAGACAAAGG 223
|||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 74 GCTCCAAACACTCTCAATGGCTTCAATCAACACTCGCTGAGCTTGATGCCAAGACCAAGG 133
Query 224 CAATGTTGAAGTTG-TTAGACGGAAACGCAGACTCTTTCGCTCAGCGTGCTGAGACTTAC 282
||||||||||| || || || || |||||||||||||| || ||||||||||||||||||
Sbjct 134 CAATGTTGAAGCTGATT-GAAGGCAACGCAGACTCTTTTGCGCAGCGTGCTGAGACTTAC 192
Query 283 TACAAGAAACGTCCTGAGCTTATCAGCTTTGTCGAAGACTTTTATCGAGCTCACCGTTCC 342
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 193 TACAAGAAACGTCCTGAGCTTATCTGCTTTGTCGAAGACTTTTATCGGGCTCACCGTTCC 252
Query 343 TTAGCCGTGAACTTCGACCACCTCAAGTCTTCCGACCACTATGGATCTCGCTCCGCTAAG 402
||||||| ||| || ||||||||||| ||||||||| || ||||| |||||| |||||
Sbjct 253 TTAGCCGAGAAGTTTGACCACCTCAAATCTTCCGACTAC---GGATCCCGCTCCTCTAAG 309
Query 403 GTTCCCCAACAATCCATGGAGTCCGTTTGTGACAGCAATTCTCACTTTGAAGATGCCGAT 462
||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| ||
Sbjct 310 TTTCCCCAACAATCCATGGACTCCGTTTCTGACAGCAATTCTCACTTTCAAGATGCCCAT 369
Query 463 TCTGAGATTGAAGACCCCCTTCAAGATGA-----T-G-C-CTCCGCA--GCTGATTG-CA 511
|||||||| | |||||| | ||||||| | | | |||| | ||| | | ||
Sbjct 370 TCTGAGATCGCAGACCC--TG-AAGATGACCAACTTGACTCTCC-CTTTGCT-AGTCACA 424
Query 512 AAGAAGATGAGACTTGGCAATT-GGAACAAGAAAGGTTGAAGCTGATCGAAGAGACTGAT 570
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||
Sbjct 425 AAGAAGATGAGACTTGG-AATTTGGAACAAGAAAGGTTGAAGCTGATCGAAGAGAGTGAT 483
Query 571 GCTCTGAGGAAACAGCT-CTTAGACAAGGACGAAGAGAAGAGAGAGGTCATCAGACAGCT 629
||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 484 GCTCTGAGGAAACAGCTGCT-AGACAAGGACGAGGAGAAGAGAGAGGTCATCAGACAGCT 542
Query 630 TTCTCTAACCCTTGAGACCCTCAAAGACGAGAACTTGAGCCTCAAGAGACGCCTTGCCCA 689
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 543 TTCTCTAACCCTTGAGACCCTCAAAGACGAGAACTTTAGCCTCAAGAGACGCCTTGCCCA 602
Query 690 CCATTCTCTCAAGCAACGCACCGTTTTGGAGTTCAAGCCACTAAACAAGTTCTTTGGGAA 749
|||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct 603 CCATTCTCTCAAGCGACGCACCTTTTTGGAGTTCAAGCCACTCGACAAGTTCTTCGGGAA 662
Query 750 GCTGTTTTACATTATGTGCGATGGCAACAAGGTCCTTTAGGTTGGCTCATCTACCTCATG 809
|||||| |||||| |||| ||||||||||||||| ||||| | |||||||||||||||||
Sbjct 663 GCTGTTCTACATTGTGTGTGATGGCAACAAGGTCGTTTAGCT-GGCTCATCTACCTCATG 721
Query 810 AG 811
||
Sbjct 722 AG 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5