BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47930.1
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935783 jgi|Araly1|935783|scaffold_403771.1 662 0.0
> Ahg935783 jgi|Araly1|935783|scaffold_403771.1
Length=463
Score = 662 bits (358), Expect = 0.0
Identities = 431/464 (93%), Gaps = 13/464 (3%)
Strand=Plus/Plus
Query 33 GAGAGACA-TTCACAGTAACCATGTCCGTCTCTCTGTTCACTGCCTTCACCGTTCTCTCA 91
|||||||| | |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 2 GAGAGACACAT-ACAGTAACCATGAGGGTCTCTCTGTTCACCGCCTTCACCGTTCTCTCA 60
Query 92 CTCTGTTTACACACTTC-A-A--C-A--T-CT-GAGTTTCAGCTGTCCACCATATCAGCT 142
||||||||||||||||| | | | | | || |||||||||||||||||||||||||||
Sbjct 61 CTCTGTTTACACACTTCAACATCCGAGTTCCTAGAGTTTCAGCTGTCCACCATATCAGCT 120
Query 143 GCACCTTCGTTCTTGCCTGAAGCTCCATCGAGTTTCTCAGCTTCTACC-CCGGCCATGTC 201
||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 121 GCACCTTCGTTTTTGCCTGAAGCTCCATCGAGTTTCTCAGCTTCT-CCTCCGGCCATGTC 179
Query 202 TCCAGATACCTCTCCCCTGTTCCCTACTCCAGGTTCAAGCGAAATGTCTCCTTCCCCGTC 261
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 TCCAGATACCTCTCCCCTGTTCCCAACTCCAGGTTCAAGCGAAATGTCTCCTTCCCCGTC 239
Query 262 GGAATCGTCTATCATGCCGACAATCCCCTCAAGCCTTAGTCCACCAAACCCAGATGCTGT 321
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 AGAATCTTCTATCATGCCGACAATCCCCTCAAGCCTAAGTCCACCAAACCCAGATGCTGT 299
Query 322 CACTCCTGATCCTCTGCTCGAAGTTTCTCCAGTTGGATCTCCTCTTCCAGCTTCTTCCTC 381
| ||| |||||||||||||||| ||||||||||||| || |||||||| |||||||||||
Sbjct 300 CTCTCATGATCCTCTGCTCGAATTTTCTCCAGTTGGGTCACCTCTTCCTGCTTCTTCCTC 359
Query 382 TGTTTGTTTGGTCTCATCACAACTCTCATCTCTGCTTCTTGTCCTACTCATGTTGCTACT 441
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TGTTTGTTTGGTCTCATCACAACTCTCATCTCTGCTTCTTGTCCTCCTCATGTTGCTACT 419
Query 442 AGCTTTCTGCAGTTTCTTCTAGTAATCATATAGAAACAGCGAGT 485
|| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct 420 AGATTTCTGCAGTATCTTCTAGTAAGCATATAGAAACAGCGAGT 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25999829394
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5