BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G47950.1

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg322437 jgi|Araly1|322437|fgenesh1_pm.C_scaffold_4002494           222    2e-57


> Ahg322437 jgi|Araly1|322437|fgenesh1_pm.C_scaffold_4002494
Length=303

 Score =  222 bits (120),  Expect = 2e-57
 Identities = 141/150 (94%), Gaps = 5/150 (3%)
 Strand=Plus/Plus

Query  83   AACAACGTGTTTGATGTGTCACCGTTCTTGCTTTTAGAAGCATCTGCAGATTCCGAAGCT  142
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  4    AACAACGTGTTTGATGTGTCACCGTTCTTGCTATTAGAAGCATCTGCAGATTCCGAAGCC  63

Query  143  GGCCACGACAGCGTTGACGATGATAAATGCGTTAAGGATTACGATCTTGGTCATGAGTCT  202
            ||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||
Sbjct  64   GGCCACGACAGCGTTGACGATGATAAATGCGTTAAGGATTACGATATTG---ATGAGTCT  120

Query  203  T-CTAGTGCCAGTTCTTGCGAGACGTCTTG  231
            | | ||||||||||| ||||||||||||||
Sbjct  121  TGC-AGTGCCAGTTCGTGCGAGACGTCTTG  149


 Score =  215 bits (116),  Expect = 3e-55
 Identities = 132/140 (94%), Gaps = 0/140 (0%)
 Strand=Plus/Plus

Query  318  acgaagacggagaaggagaagTGAATAGCTACATAAGATGTGGGAGAAGCCAACGTGAAA  377
            |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct  164  ACGACGACGGAGAAGGAGAGGTGAATAGCTACATAAGATGTGGAAGAAGCCAACGTGAAA  223

Query  378  ATCTGGCTGTGGATTCTGCTGCGGTGGTGAGTGAGATGGATCAAAATCGAATGTTCTGGG  437
            ||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct  224  ATCTGGCCGTAGATTCTGGTGCGGTGGTGAGTGAGATTGATCAAAATCGAATGTTCTGGG  283

Query  438  AAGCTTGTCTCGCATCTTGA  457
            ||||||| ||||||||||||
Sbjct  284  AAGCTTGCCTCGCATCTTGA  303



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21977619264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5