BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47960.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483987 jgi|Araly1|483987|fgenesh2_kg.4__3047__AT2G47960.1 2218 0.0
> Ahg483987 jgi|Araly1|483987|fgenesh2_kg.4__3047__AT2G47960.1
Length=1624
Score = 2218 bits (1201), Expect = 0.0
Identities = 1262/1292 (98%), Gaps = 1/1292 (0%)
Strand=Plus/Plus
Query 34 CGCAGACGCATGGACCGCACTCGCTGGCCTTCAGGGTGATGCGACTCTGCAAACCGTCTT 93
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 CGC-GACGCATGGACCGCACTCGCTGGCCTTCAGGGTGATGCGACTCTGCAAACCGTCTT 64
Query 94 TCCACGTCGATCCTCCCCTCCGCATTGACCCTTTCGATCTTCTCGCCGGCGAGGATTTCT 153
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 TCCACGTCGATCCCCCCCTCCGCATTGACCCTTTCGATCTTCTCGCCGGCGAGGATTTCT 124
Query 154 CCGACGATCCCTCTTCCGCCTCCTTGTTCCGCCGCCACGTATCTTCTGCCGACGCTGTCG 213
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 125 CCGACGATCCCTCTTCCGCCTCCTTGTTCCGCCGCCACGTTTCTTCTGCCGACGCTGTCG 184
Query 214 ACTCCGATCTCAGCTACCGAAATAGATTCCTCCTCAACCATCCTACCGATCCAATCGGTC 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 ACTCCGATCTCAGCTACCGAAATAGATTCCTCCTCAACCATCCTACCGATCCAATCGGTC 244
Query 274 TCTCTGGTCTTCTGCTTCTTCCTCAGTCCTTCGGAGCGATCTATCTCGGAGAAACATTCT 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TCTCTGGTCTTCTGCTTCTTCCTCAGTCCTTCGGAGCGATCTATCTCGGAGAAACATTCT 304
Query 334 GTAGCTATATCAGCGTCAACAATAGTTCCACTTCAGAAGTTCGGGATGTTACCATTAAGG 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GTAGCTATATCAGCGTCAACAATAGTTCCACTTCAGAAGTTCGGGATGTTACCATTAAGG 364
Query 394 CAGAAATTCAGACAGAGAGGCAGAGGATTCTACTTCTGGATACATCCAAGTCACCTGTTG 453
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 365 CAGAAATTCAGACAGAGAGGCAGAGGATCCTACTTCTGGATACATCCAAGTCACCTGTTG 424
Query 454 AATCGATACGGACAGGTGGACGCTATGATTTCATAGTTGAACACGATGTGAAAGAGCTTG 513
|||| ||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 425 AATCCATACGGACAGGGGGACGCTATGATTTCATAGTGGAACATGATGTCAAAGAGCTTG 484
Query 514 GAGCTCACACGTTGGTTTGCTCTGCATTGTACAATGACGCTGATGGTGAGCGTAAATATC 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GAGCTCACACGTTGGTTTGCTCTGCATTGTACAATGACGCTGATGGTGAGCGTAAATATC 544
Query 574 TTCCCCAGTTTTTCAAGTTTGTCGTTGCAAACCCACTCTCAGTGAGGACCAAGGTTCGAG 633
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 545 TTCCCCAGTTTTTCAAGTTTGTCGTTGCAAACCCACTTTCAGTCAGGACCAAGGTTCGAG 604
Query 634 TTGTAAAGGAGACGACATTTTTAGAGGCTTGCATTGAGAACCATACAAAAGCAAACCTCT 693
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TTGTAAAGGAGACTACATTTTTAGAGGCTTGCATTGAGAACCATACAAAAGCAAACCTCT 664
Query 694 TTATGGACCAAGTTGATTTTGAACCTGCTAAGCAATGGAGTGCTGTAAGATTACAGAATG 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TTATGGACCAAGTTGATTTTGAACCTGCTAAGCAATGGAGTGCTGTAAGATTACAGAATG 724
Query 754 AAGACTCAACAGAAGATCCTCCAACCAGTGGTCTTAGTGGACTGATACCTAAACCGCCAG 813
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 725 AAGACTCAACAGAAGATACTCCAACCAGTGGACTTAGTGGACTGATACCTAAACCGCCAG 784
Query 814 TTATAATCCGATCTGGCGGGGGTATCCACAACTATCTCTACAAGTTAAACCCATCTGCAG 873
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 785 TTATAATCCGATCTGGCGGGGGCATCCACAACTATCTCTACAAGTTAAACCCATCTGCAG 844
Query 874 ATGTTTCCGGGCAAACAAAATTCCAGGGAAGTAATATCCTGGGTAAATTTCAAATAACAT 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 ATGTTTCCGGGCAAACAAAATTCCAGGGAAGTAATATCCTGGGTAAATTTCAAATAACAT 904
Query 934 GGCGCACAAATTTGGGTGAACCTGGTCGCTTACAAACACAACAAATTCTCGGCGCTCCAG 993
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 905 GGCGCACAAATTTGGGTGAACCTGGTCGCTTACAAACACAACAAATTCTCGGTGCTCCAG 964
Query 994 TAAGCCGTAAAGAGATTAATATGCGAGTTGTAGAGGTTCCAGCTGTTATACACTTAAATA 1053
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 965 TCAGCCGTAAAGAGATTAATATGCGAGTTGTAGAGGTTCCAGCTGTTATACATTTAAATA 1024
Query 1054 GACCCTTTCGGGCATACTTGAATCTCACAAACCAAACTGATAGGCAACTGGGACCCTTCG 1113
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1025 GACCCTTTCCGGCATACTTGAATCTCACAAACCAAACCGATAGGCAACTGGGACCCTTTG 1084
Query 1114 AGGTCTCACTGTCACAAGATGAAACACAATTGGAGAAGCCGGTTGGTATTAATGGTCTCC 1173
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1085 AGGTCTCACTGTCACAAGATGAATCACAAATGGAGAAGCCGGTTGGTATTAATGGTCTCC 1144
Query 1174 AGACTCTGATGTTACCCAGGATTGAAGCATTTGGCTCCAATGATTTCCAATTGAATCTTA 1233
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1145 AGACTCTGATGTTACCCAGGATTGAGGCATTTGGCTCCAATGATTTCCAATTGAATCTTA 1204
Query 1234 TTGCCTCCAAGCTGGGAGTCCAGAAAATCGCTGGGATCACGGCCTTGGACACAAGAGAGa 1293
|||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 1205 TTGCCTCCAAGCTGGGAGTCCAGAAAATATCTGGGATCACAGCCTTGGACACGAGAGAGA 1264
Query 1294 aaaaaaCCTACGAACTTGTTCCAGATATGGAG 1325
|||||||||||||||||||||| || ||||||
Sbjct 1265 AAAAAACCTACGAACTTGTTCCCGAGATGGAG 1296
Score = 272 bits (147), Expect = 5e-72
Identities = 271/325 (83%), Gaps = 32/325 (10%)
Strand=Plus/Plus
Query 1324 AGATATTTGTAGAGACAGACTAAGTTATAAGACAGCCTCCCCGAGTGGTGTTCTTCCTCG 1383
|||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1331 AGATATTTGTAGAGTCAGGCTAAGTTTTAAGACAGCCTCCCCGAGTGGTGTTCTTCCTCC 1390
Query 1384 ACAGGTTTTGTTATTGCACCTCCTCTGTGTTGTTAA-TTGTTTTTGTTTCTTAGTAGAAA 1442
||||||||||||||||||||| | ||||| | | || || |||||||||||||||| |||
Sbjct 1391 ACAGGTTTTGTTATTGCACCT-C-CTGTG-T-TCAATTTTTTTTTGTTTCTTAGTAAAAA 1446
Query 1443 ATAATTTGGCTCCTTTGTAGAAGAAGaaaaaaaCTAAACGGCTTTAACATATGGACTACG 1502
||||||||||| |||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1447 ATAATTTGGCT-CTTTGTAGAAGAAGAAAAAAACTAAACGGCTTTAACATGTGTAATACG 1505
Query 1503 CCGTTTGTATCTTGTTGTTACAAACCATTAAACGTTACTGTTTGATCAATATGTTAATTC 1562
|||||||||| || || | ||| || ||||| |||||||||
Sbjct 1506 CCGTTTGTAT-TT------AC------T-----GTT--TG----ATCAA-ATGTTAATTG 1540
Query 1563 AGAACTGTTTGGTTTAAAGCATAAGTATTGAAGTCGTCAAATGAACAACTTGCAATCTTT 1622
| ||||||||||||||||| | || |||||||||| | | || ||||||| ||||||||
Sbjct 1541 AAAACTGTTTGGTTTAAAGAAGAACTATTGAAGTCAACTA-TGTACAACTTACAATCTTT 1599
Query 1623 TGCTTTGTATGAGATACAAATAAAA 1647
|||||||| |||||| |||||||||
Sbjct 1600 TGCTTTGTCTGAGATGCAAATAAAA 1624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5