BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47970.1
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483989 jgi|Araly1|483989|fgenesh2_kg.4__3049__AT2G47970.1 2071 0.0
Ahg486804 jgi|Araly1|486804|fgenesh2_kg.5__2796__AT3G63000.1 1044 0.0
> Ahg483989 jgi|Araly1|483989|fgenesh2_kg.4__3049__AT2G47970.1
Length=1376
Score = 2071 bits (1121), Expect = 0.0
Identities = 1240/1298 (96%), Gaps = 5/1298 (0%)
Strand=Plus/Plus
Query 23 TTTGGGGGAAAGAAGAAAGAAGGAAGACGATGATGATGCTCAGAATCCGAAGCAGAGATG 82
||||||||||||||||||| |||| || || |||||||||||||||||||||||||||||
Sbjct 1 TTTGGGGGAAAGAAGAAAGGAGGAGGAAGACGATGATGCTCAGAATCCGAAGCAGAGATG 60
Query 83 GACTGGAGAGAGTCACAGCGGAGGGAGCTCATATCACTGTTTCCCAGCTCAAAACCTTGA 142
|||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 61 GACTGGAGCGAGTCACAGCCGAGGGAGCTCATATAACTGTTTCCCAGCTCAAAACCTTAA 120
Query 143 TCGCGGATCAGCTTCAGATCCCTCTCCATAAGCAGACCTTATCCACCAATCGTGATCTCC 202
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TCGAGGATCAGCTTCAGATCCCTCTCCATAAGCAGACCTTATCTACCAATCGTGATCTCC 180
Query 203 TCCTCGCCAAAACTCCCGCTGATCTACTCGCCTTCACCGACCTCACGGACCCAAACCTCC 262
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 181 TCCTCGCCAAAACTCCCGCTGATCTACTCGCCTCCACCGACCTCACCGACCCAAACCTCC 240
Query 263 CCCTCTCCTCTCTCAACCTCGGCCATGGCTCTATGCTCTACCTCGCCTACGATGGCGAGC 322
|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 241 CCCTCTCCTCTCTCAATCTCGGGCATGGCTCTATGCTCTTCCTCGCCTACGATGGGGAGC 300
Query 323 GCTCCATTCCTGGAGCTCCTCCCGTTACTCCTGCCGGATCCTTCGGGAGGAAGATGACCG 382
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 301 GCTCCATTCCTGGAGCTCCTCCCGCCACTCCTGCCGGATCCTTCGGCAGGAAGATGACCG 360
Query 383 TCGATGACTTGATCGCCCGCCAGATGCGCGTCACTCGTCAGGAGACGTCTCACTGCGACT 442
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TCGATGACTTGATCGCCCGCCAGATGCGCGTTACTCGTCAGGAGACGTCTCACTGCGACT 420
Query 443 CCGTCTCCTTCGATCGCGA-TGCCGCCAACGCTTTCCAGCACTACGTCAATGAGTCTCTA 501
||||||||||||||||||| || ||||||||| ||||||||||||||||| || ||||||
Sbjct 421 CCGTCTCCTTCGATCGCGATTG-CGCCAACGCCTTCCAGCACTACGTCAACGATTCTCTA 479
Query 502 GCTTTTGCCGTCAAGCGCGGCGGCTTTATGTACGGCACCGTCACCGAGGAAGGACAGGTG 561
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 480 GCTTTTGCCGTCAAGCGCGGCGGCTTTATGTACGGCACCGTCACGGAGGGAGGACAGGTG 539
Query 562 GAAGTTGATTTCATTTACGAGCCGCCCCAGCAAGGCACGGAGGCTAATCTTATTCTGATG 621
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 GAAGTTGATTTCATCTACGAGCCGCCGCAGCAAGGCACGGAGGCTAATCTTATTCTGATG 599
Query 622 AGAGATGCTGATGAAGAGAAGCGCGTGGACGCAATCGCCATGGGCTTGGGGATGAGGAGG 681
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 600 AGAGATGCCGATGAAGAGAAGCGCGTGGACGCAATCGCCATGGGCCTGGGGATGAGGAAG 659
Query 682 GTCGGTTTCATTTTTAACCAGACCGTGGTGCAGGACAAGACTGAATACACTCTGTCCAAC 741
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 GTCGGTTTCATTTTTAACCAGACCGTGTTGCAGGACAAGACTGAATACACTCTGTCCAAC 719
Query 742 GCCGAGGTGCTACAGGCGGCGGAGCTTCACGCCGAGAGCGAGCTGAAGGAGTGGGTCACG 801
||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 720 GCCGAGGTGCTACAGGCGGCGGAGCTTCATGCCGAGGGCGAGCTGCAGGAGTGGGTCACG 779
Query 802 GCGGTGGTGAAGCTTGAGGTGAATGAGGATGGTGGCGCCGATGTCCATTTCGAGGCGTTT 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCGGTGGTGAAGCTTGAGGTGAATGAGGATGGTGGCGCCGATGTCCATTTCGAGGCGTTT 839
Query 862 CAAATGAGTGATATGTGCATCAGGCTGTTCAAGGAAGAGTGGTTCGAGACGGAGATTATG 921
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 CAGATGAGTGATATGTGCATCAGGCTTTTCAAGGAAGAGTGGTTCGAGACGGAGATTATG 899
Query 922 CCGGACGATGATCCAAAGCTCTCTAAGATGAAGAAGGAGGTGGTTGTTGGTGTGAAGGAT 981
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 900 CCCGACGATGATCCAAAGCTCTCTAAGATGAAGAAGGAGGTGGTTGTTGGTGTCAAGGAT 959
Query 982 CTTAAGGAGGTAGATAACGATTTCTTCCTCGTTCTCGTCAGGATCTTGGATCACCAGGGG 1041
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 CTTAAGGAGGTGGATAACGATTTCTTCCTCGTTCTGGTCAGGATCTTGGATCACCAGGGA 1019
Query 1042 CCTCTGTCATCAACATTCCCAATAGAGAACCGGAGCAGTCGAGCAACGATGCGGGCTCTA 1101
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1020 CCCCTGTCATCAACATTCCCAATAGAGAACCGGAGCAGTCGAGCAACGATGCGGGATCTG 1079
Query 1102 AAAACACATCTGGACCGGGCAAAGAGCTTGCCGTTGGTGAAGAAGATGTCAGATTTTCAT 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AAAACACATCTGGACCGGGCAAAGAGCTTGCCGTTGGTGAAGAAGATGTCAGATTTTCAT 1139
Query 1162 CTGCTTCTCTTTGTGGCTCAGTTTCTGGACGTGTCATCGGACGTCCCTGCTTTAGCCGAG 1221
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1140 CTGCTTCTCTTTGTGGCTCAGTTTCTGGACGTGTCATCGGACGTCCCTGCCATAGCTGAG 1199
Query 1222 TGTGTGCGTCTGCAGTCGCCTGTCCCAGAGGGCTATGCGTTGCTCATCGAATCAATGGCC 1281
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGTGTGCGTCTGCAGTCGCCTGTTCCAGAGGGCTATGCGTTGCTCATCGAATCAATGGCC 1259
Query 1282 AACACTTGTTAATTTTTGTGTCATTGTTT-TTTGGTTC 1318
|| ||||||||| |||| | |||| ||| ||| ||||
Sbjct 1260 AATACTTGTTAACTTTT-TATCAT-GTTCGTTTAGTTC 1295
> Ahg486804 jgi|Araly1|486804|fgenesh2_kg.5__2796__AT3G63000.1
Length=1414
Score = 1044 bits (565), Expect = 0.0
Identities = 1047/1278 (82%), Gaps = 40/1278 (3%)
Strand=Plus/Plus
Query 41 GAAGGAAGACGATGATGATGCTCAGAATCCGAAGCAGAGATGGACTGGAGAGAGTCACAG 100
||| ||||| ||||| |||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 56 GAACGAAGAAGATGACGATGCTGAGAATCCGAAGCAGAGATGGATTGGAGAGAGT--GAG 113
Query 101 CG--GAGGGAGCTCATATCACTGTTTCCCAGCTCAAAACCTTGAT-CGCGGATCAGCTTC 157
|| || ||| ||||||| || || ||||| ||||||||| | || | || ||||||||
Sbjct 114 CGTAGATGGACCTCATATTACAGTCTCCCAACTCAAAACCCTAATCCAAGG-TCAGCTTC 172
Query 158 AGATCCCTCTCCATAAGCAGACCTTATCCACCAATCGTGATCTCCTCCTCGCCAAAACTC 217
|||||||| ||||||| || ||||||||||||||||| | || |||||||||||||| |
Sbjct 173 AGATCCCTATCCATAACCAAACCTTATCCACCAATCGAAACCTTCTCCTCGCCAAAAC-C 231
Query 218 CC-GCTGATCTACTCGCCTTCACCGACCTCACGGACCCAAACCTCCCCCTCTCCTCTCTC 276
|| |||||| | || | ||||||||| | | || |||||||||| |||| ||||||
Sbjct 232 CCTGCTGATTTCCTAGGGTTCACCGACATGGCCGATCCAAACCTCCGAATCTCGTCTCTC 291
Query 277 AACCTCGGCCATGGCTCTATGCTCTACCTCGCCTACGATGGCGAGCGCTCCATTC-CTGG 335
|| |||| ||| ||||||||||||||||| || ||||| || |||||| | |||| | ||
Sbjct 292 AATCTCGCCCACGGCTCTATGCTCTACCTTGCTTACGAAGGTGAGCGCACGATTCGC-GG 350
Query 336 -AGCTCCTCCCGTTACTCCTGCCGGATCCTTCGGGAGGAAGATGACCGTCGATGACT-TG 393
|| ||| ||||||| ||||| || |||||||||||||||||||||||||| || | |
Sbjct 351 TGGC-CCTGCCGTTACACCTGCTGGTTCCTTCGGGAGGAAGATGACCGTCGAAGA-TCTA 408
Query 394 ATCGCCCGCCAGATGCGCGTCACTCGTCAGGAGACGTCTCACTGCGACTCCGTCTCCTTC 453
||||| || |||||||||||| ||| ||||||| |||||||||||| |||||||| |||
Sbjct 409 ATCGCACGGCAGATGCGCGTCGGTCGCCAGGAGAAGTCTCACTGCGATTCCGTCTCGTTC 468
Query 454 GATCGCGA-TGCCGCCAACGC-TTTCCAGCACTACGTCAATGAGTCTCTAGCTTTTGCCG 511
|||||||| || ||||||||| ||| ||||| |||||||| ||||| || || || || |
Sbjct 469 GATCGCGATTG-CGCCAACGCGTTT-CAGCATTACGTCAACGAGTCGCTTGCCTTCGCTG 526
Query 512 TCAAGCGCGGCGGCTTTATGTACGGCACCGTCACCGAGGAAGGACAGGTGGAAGTTG-AT 570
|||| ||||| || || |||||||| | |||| | ||| |||| ||||| | || || ||
Sbjct 527 TCAAACGCGGTGGATTCATGTACGGTAACGTCTCTGAGCAAGGTCAGGTTG-AGGTGAAT 585
Query 571 TTCATTTACGAGCCGCCCCAGCAAGGCACGGAGGCTAATCTTATTCTGATGAGAGA-TGC 629
||||| |||||||| || |||||||| | ||||| |||||| |||||||||||||| | |
Sbjct 586 TTCATCTACGAGCCACCGCAGCAAGGGATGGAGGATAATCTGATTCTGATGAGAGACT-C 644
Query 630 TGATGAAGAGAAGCGCGTGGACGCAATCGCCAT-GGGCTTGGGGATGAGGAG-GGTCGGT 687
||| |||||||| || || || || || || | ||| || ||||||||||| | | |||
Sbjct 645 TGAGGAAGAGAAACGTGTTGATGCTATTGCTTTAGGG-TTAGGGATGAGGAGAGTTGGGT 703
Query 688 TTCATTTTTAACCAGACCGTG-GTGCAGGACAAGACTGAATACACTCTGTCCAACGCCGA 746
|| || || |||||||| ||| | |||||||||| || |||||| |||| |||| ||
Sbjct 704 TT-ATATTCAACCAGACTGTGACT-CAGGACAAGAAGGAGTACACTTTGTCTAACGTTGA 761
Query 747 GGTGCTACAGGCGGCGGAGCTTCACGCCGAGAGCGAGCTGAAGGAGTGGGTCACGGCGGT 806
|||| | | |||||| ||||||||||||||||||| |||||||||||||||| |||||
Sbjct 762 GGTGTTGCTTGCGGCGCAGCTTCACGCCGAGAGCGAATTGAAGGAGTGGGTCACTGCGGT 821
Query 807 GGTGAAGCTTGAGGTGAATGAGGATGGTGGC-GCCGATGTCCATTTCGAGGCGTTTCAAA 865
|||||||||||| | || ||||||||| || || ||||| || |||||||||||||| |
Sbjct 822 TGTGAAGCTTGAGATCAACGAGGATGGT-GCTGCTGATGTTCACTTCGAGGCGTTTCAGA 880
Query 866 TGAGTGATATGTGCATCAGGCTGTTCAAGGAA-GAGTGGTTCGAGACGGAGATT--ATGC 922
|||||||||||||| | ||| |||| |||||| || ||||||||||| |||||| || |
Sbjct 881 TGAGTGATATGTGCGTTAGGTTGTTTAAGGAAGGA-TGGTTCGAGACTGAGATTGGAT-C 938
Query 923 CGGACGATGATCCAAAGCTCTCTAAGATGAAGAAGGAGGTGGTTGTTGGTGTGAAGGATC 982
| || |||||||| |||||||| ||| ||||||| ||||| |||||||| || ||||| |
Sbjct 939 C-GAGGATGATCCCAAGCTCTCCAAGTTGAAGAAAGAGGTTGTTGTTGGAGTCAAGGA-C 996
Query 983 -TTAAGGAGGTAGATAACGATTTCTTCCTCGTTCTCGTCAGGATCTTGGATCACCAGGGG 1041
|||| || || || || ||||||||||| |||||||||| |||||||||||| ||||
Sbjct 997 GTTAAAGAAGTCGACAATGATTTCTTCCTTGTTCTCGTCAAGATCTTGGATCATCAGGTA 1056
Query 1042 CCTCTGTCAT-CAACATTCCCAATAGAGAACCGGAGCAGTCGAGCAACGATGCGGGCTCT 1100
||| |||| | | || ||||| ||||||||||||| || || | |||| ||||||||| |
Sbjct 1057 CCTTTGTCGTGC-ACCTTCCCGATAGAGAACCGGAACATTCAAACAACAATGCGGGCTTT 1115
Query 1101 AAAAACACATCTGGACCGGGCAAAGAGCTTGCCGTTGGTGAAGAAGATGTCAGATTTTCA 1160
||||| ||| |||| || |||| |||| | || || ||||||| ||| || ||||||||
Sbjct 1116 GAAAACGCATATGGAGCGAGCAAGGAGCCTCCCATTTGTGAAGAGGATCTCTGATTTTCA 1175
Query 1161 TCTGCTTCTCTTTGTGGCTCAGTTTCTGGACGTGTCATCGGACGTCCCTGCTTTAGCCGA 1220
||||||||||||||||||||||||||| ||||| ||||| ||||||||||| || || ||
Sbjct 1176 TCTGCTTCTCTTTGTGGCTCAGTTTCTAGACGTATCATCCGACGTCCCTGCGTTGGCTGA 1235
Query 1221 GTGTGTGCGTCTGCAGTCGCCTGTCCCAGAGGGCTATGCGTTGCTCATCGAATCAATGGC 1280
||| || ||||| ||||| | |||||| ||||| |||| |||||||||||| || |||||
Sbjct 1236 GTGCGTCCGTCTTCAGTCTCATGTCCCTGAGGGTTATGAGTTGCTCATCGACTCCATGGC 1295
Query 1281 CAACACTTGTTAATTTTT 1298
||| |||| |||| ||||
Sbjct 1296 CAATACTTCTTAAATTTT 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56221201620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5