BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47990.1
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935789 jgi|Araly1|935789|scaffold_403777.1 2483 0.0
> Ahg935789 jgi|Araly1|935789|scaffold_403777.1
Length=1631
Score = 2483 bits (1344), Expect = 0.0
Identities = 1539/1633 (94%), Gaps = 14/1633 (1%)
Strand=Plus/Plus
Query 65 TACTCTAGAATAATGGAGGAAGAGCTTCGTGTTCGGCTGAATGACCATCAAGTGTCAAAG 124
|||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 TACTGTTGAAGAATGGAGGAAGAGCTTCGTGTTCGGCTGAATGACCATCAAGTGTCAAAG 68
Query 125 GTTTTCCCTGTGAAGCCCAAATCAACGGCGAAACCTGTTTCCGAATCGGAGACTCCGGAA 184
|||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||
Sbjct 69 GTTTTCCCTGTGAAACCAAAATCAACGGCGAAACCTGTTTCCAAATCGGAGACTCCGGAA 128
Query 185 TCGAGGTACTGGTCCTCCTTCAAAAATCATTCCACACCTAA-TCTCGTCTCCTCCGTAG- 242
|| || ||||||||||| |||||||||||||||| ||| || ||||||||||||||| |
Sbjct 129 TCCAGATACTGGTCCTCTTTCAAAAATCATTCCATACC-AACTCTCGTCTCCTCCGT-GT 186
Query 243 CCGCTTTGGCTTTCTCTCCGGTCCACCCTCACTCCTTGGCCGTCGCTCACTCCGCCACCG 302
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 187 CCGCCTTGGCTTTCTCTCCGGTCCACCCCCACTCCTTGGCCGTCGCTCACTCCGCCACCG 246
Query 303 TCTCCCTCTTTTCCTCGCAGTCGCTTTCCTCCTCCCGCCGTTTCTCCTTCCGCGATGTTG 362
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 247 TCTCCCTCTTTTCCTCGCACTCGCTTTCCTCCTCCCGCCGTTTCTCCTTCCGTGATGTTG 306
Query 363 TCTCCTCCGTCTGTTTCCGTTCCGACGGAGCTCTTTTCGCGGCATGCGATCTCTCCGGTG 422
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 307 TCTCCTCCGTCTGCTTCCGTTCCGACGGAGCTCTTTTCGCCGCATGCGATCTCTCCGGTG 366
Query 423 TGGTCCAGGTCTTCGACATCAAGGAACGAATGGCTCTCCGTACTCTCCGCTCCCACAGCG 482
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 367 TCGTCCAGGTCTTCGACATCAAGGAGCGAATGGCTCTCCGTACCCTCCGCTCCCACAGCG 426
Query 483 CCCCCGCTCGATTCGTCAAGTATCCAG-TTCAGGACAAGCTCCACTTGGTCTCCGGAGGC 541
| ||||||||||||||||||||||| | |||||||||||||||||||||| |||| |||
Sbjct 427 CACCCGCTCGATTCGTCAAGTATCC-GTTTCAGGACAAGCTCCACTTGGTATCCGCCGGC 485
Query 542 GACGATGGAGTCGTCAAGTACTGGGATGTCGCCGGAGCAACAGTCATCTCAGATCTGCTA 601
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 486 GACGACGGAGTGGTCAAGTACTGGGATGTCGCCGGAGCAACCGTCATCTCAGATCTGTTA 545
Query 602 GGCCACAAGGATTATGTCCGCTGCGGTGATTGCTCGCCCGTCAACGATTCAATGTTGGTA 661
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 546 GGCCACAAGGACTATGTCCGCTGCGGTGATTGCTCCCCCGTCAACGATTCCATGTTGGTA 605
Query 662 ACAGGCTCTTACGATCACACGGTGAAGGTGTGGGACGCCAGAGTCCACACGTCCAATTGG 721
|| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 606 ACTGGCTCTTACGATCACACGGTGAAGGTGTGGGACACCAGAGTCCACAAGTCCAAATGG 665
Query 722 ATTGCCGAGATCAACCACGGACTCCCAGTGGAGGACGTCGTATACCTGCCTTCCGGTGGA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 666 ATTGCCGAGATCAACCACGGACTCCCAGTGGAGGACGTCGTATACCTGCCTTCTGGTGGA 725
Query 782 TTGATCGCAACCGCTGGTGGCAACAGCGTCAAGGTATGGGATTTGATCGGAGGCGGGAAG 841
|||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 726 ATGATTGCAACCGCCGGTGGGAACAGCGTCAAGGTTTGGGACTTGATCGGAGGCGGGAAG 785
Query 842 ATGGTTTGCTCCATGGAGAGTCACAACAAGACCGTCACGTCTCTCCGCGTTGCG-AGAAT 900
||||||||||| |||||||||||||||||||| |||||||||||| |||||| | ||| |
Sbjct 786 ATGGTTTGCTCAATGGAGAGTCACAACAAGACTGTCACGTCTCTCTGCGTTG-GTAGACT 844
Query 901 GGAATCGGCTGAGAGTCGACTTGTGAGCGTTGCTTTGGACGGATACATGAAAGTCTTCGA 960
|||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 845 GGAATCCGCTGAGACTCGACTTGTTAGCGTTGCTTTGGACGGATACATGAAAGTGTTTGA 904
Query 961 TTACGGGAGAGCAAAGGTGACTTACTCTATGAGGTTTCCTGCTCCTCTCATGTCTCTTGG 1020
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 905 TTACGGGAGAGCAAAGGTTACTTACTCTATGAGGTTTCCAGCTCCTCTCATGTCTCTTGG 964
Query 1021 CCTTTCCCCCGATGGTTCCACTCGGGTAATCGGAGGGTCTAATGGCATGGTGTTTGCCGG 1080
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 965 CCTTTCCCCCGATGGTTCCACTCGGGTGATCGGAGGGTCTAATGGCATGGTCTTTGCCGG 1024
Query 1081 TAAGAAGAAGGTGAGAGATGTTGTTGGAGGACAGAAGAAAAGTTTGAATCTCTGGAGTCT 1140
|||||||||| |||||| |||||||||| | ||||||||||||||| ||| |||||| |
Sbjct 1025 TAAGAAGAAGCTGAGAGTTGTTGTTGGA-G--AGAAGAAAAGTTTGAGTCTTTGGAGTGT 1081
Query 1141 GATAAGCGATGTGGATGAGAGTAGGAGAAGGGCACTGAGGCCTACGTATTTCAGGTACTT 1200
|| ||| | |||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1082 GAGGAGCCAAGTGGATGAGACTAGGAGAAGGGCACTGAGGCCGACGTATTTCAGGTACTT 1141
Query 1201 CCAGAGAGGGCAGAGCGAGAAGCCATCCAAAGATGATTACTTGGTCAAGGAGAAGAAAGG 1260
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1142 CCAGAGAGGGCAGAGCGAGAAGCCATCCGAAGAGGATTACTTGGTCAAGGAGAAGAAAGG 1201
Query 1261 ATTGAAGCTGACGAGACACGATAAGCTCTTGAAGAAGTTCAGGCATAAGGAAGCTCTGGT 1320
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1202 ATTGAAGCTGACAAGACACGACAAGCTCTTGAAGAAGTTCAGGCATAAGGAAGCTCTGGT 1261
Query 1321 CTCGGTGTTGGAGGAGAAGAAACCGGCCAATGTTGTGGCAGTGATGGAAGAATTAGTGGC 1380
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1262 CTCGGTGTTGGAGGAGAAGAAACCGGCCAATGTTGTCGCAGTGATGGAAGAATTAGTGGC 1321
Query 1381 GAGGAGGAAGCTGATGAAGTGCGTGTCGAATATGGAGGAAGGCGAGTTGGGAATGCTGCT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GAGGAGGAAGCTGATGAAGTGCGTGTCGAATATGGAGGAAGGCGAGTTGGGAATGCTGCT 1381
Query 1441 AGGCTTCTTACAAAGGTACTGCACTGTGCAGAGGTATTCAGGATTGTTGATGGGATTGAC 1500
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 AGGTTTCTTACAAAGGTACTGCACTGTGCAGAGGTATTCAGGATTGTTGATGGGATTGAC 1441
Query 1501 GAAGAAGGTTTTGGAGACGAGAGCTGAAGACATCAAGGGTAAAAACGAGTTTAAAGGGCT 1560
||||||||||||||||||||||||||| ||||| |||||||| || ||||||| ||| ||
Sbjct 1442 GAAGAAGGTTTTGGAGACGAGAGCTGAGGACATTAAGGGTAAGAAGGAGTTTACAGGTCT 1501
Query 1561 TCTCAGGAACTTGAAGAGGGAGGTTAATCAGGAGATTAGGATACAACAGTCTCTTCTAGA 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 TCTCAGGAACTTGAAGAGGGAGGTTAATCAGGAGATTAGGATACAACAGTCTCTTCTAGA 1561
Query 1621 GATTCAGGGTGTTATTGCTCCTTTGATGAGAATTGCGGGTAGAAGTTGATCTAATCAATA 1680
|||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 1562 GATTCAGGGTGTTATTGCTCCTTTAATGAGAATTGCTGGTAGAAGTTGATCAAATCAAT- 1620
Query 1681 TCACAAGTTTTGT 1693
||| | |||||||
Sbjct 1621 TCA-A-GTTTTGT 1631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68029177570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5