BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48000.1
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902855 jgi|Araly1|902855|Al_scaffold_0004_3505 667 0.0
> Ahg902855 jgi|Araly1|902855|Al_scaffold_0004_3505
Length=972
Score = 667 bits (361), Expect = 0.0
Identities = 530/607 (87%), Gaps = 29/607 (5%)
Strand=Plus/Plus
Query 1 ATGA-AGAAGCGCATGTGGAGAATCTCACTGATTTCCCAGA--TATCTGATCTGCTCTGC 57
|||| | |||||||| ||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1 ATGATAAAAGCGCATCTGGAGAATCTCACTGATTTCCCAAATTTCTCTGATCTGCTCTGC 60
Query 58 CTTTCCCGTGGCTCTTCTTCAACCTTGAAGACTCTGACCCCATTCTGCTTTACCCTCTCC 117
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 61 CTTTCTCGTGGGTCTTCTTCAACCTTGAAGACTCTGACCCCCTTCTGCTTTACCCTCTTC 120
Query 118 AGGTCTCCCT-TCCACCAATCCGGGGGCGATGATGATGCTTCGGGATTGAAAAACCAATT 176
|||||| ||| | |||| ||| | | || ||||||| ||||||| ||||||
Sbjct 121 AGGTCT-CCTATACACC-CTCC--CTTC-A-AAT-CCGCTTCGGCTTTGAAAACCCAATT 173
Query 177 GTTGCGCTTCCGTAATGATTCCGGTAAAGTTGCCTCCGTTTTGGAGAG-GA--ACAAAAT 233
|||||||||| |||||||||||| |||||||||||| ||||||||||| | || ||||
Sbjct 174 GTTGCGCTTCTGTAATGATTCCGATAAAGTTGCCTCTGTTTTGGAGAGTCACGACGAAAT 233
Query 234 CCAAGGAGCTGCGTTTGTTGAGCTCCTTAGGCAGTTACGTCCATGGCCCGTTTTGTCCCA 293
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 234 CCAAGGAGCTGCTTTTGTTGAGCTCCTTAGGCAGTTACGTCCTTGGCCCGTTTTGTCCCA 293
Query 294 ACTGGTGTTCGACTGGAGAAGAAACAAGGCACTATGCGATGGGTTGCCTATGACTGCTGA 353
| |||| ||||||||||||||||||||||||||||||||| || || || | | |
Sbjct 294 AGTGGTCTTCGACTGGAGAAGAAACAAGGCACTATGCGAT-GG-TG----TG-C--C-CA 343
Query 354 TGAATACGCTAAGGGCATTACCATTTCTGGTAGACTGAAGAATGTCGATTTGGCCCTTTC 413
||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 344 TGACT--GCTAAGGGCATTACAATTTCTGGTAGACTGAAGAATGTCGATTTGGCGCTTTC 401
Query 414 CTTGTTTCACGAGTCTGCAAACAAGACCACCTCCGTCTACAATGCTTTGATGGGTGCTTA 473
||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 402 CTTGTTTAACGAGTCCCCAAAGAAGACCACCTCCGTCTACAATGCTTTGATGGGTGCTTA 461
Query 474 CCTCTGCAACGGTTTGTCTCATCATTGCGAGCAGCTCTTCCTTGACTTCAATTCTCAACA 533
| | |||||||||||| | || ||||| ||||||||||||||||||||||| |||||||
Sbjct 462 CATGTGCAACGGTTTGGCAGATGATTGCAAGCAGCTCTTCCTTGACTTCAATGCTCAACA 521
Query 534 AGACGGACCCTCCTCTTCTACTCCATCTGTCTCTACTTACAACATCCTCATTTCTCTTTA 593
| | || | || | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 ACAAGGGCACT-C-C-TCTACTCCATCTGTCTCTACTTACAACATCCTCATTTCTCTTTA 578
Query 594 TGGCCGT 600
|||||||
Sbjct 579 TGGCCGT 585
Score = 566 bits (306), Expect = 2e-160
Identities = 334/348 (96%), Gaps = 0/348 (0%)
Strand=Plus/Plus
Query 1056 AGACCAGGCTATTACAAAAGGACTCCAGATAGAGACAGATGGTATTATGAGATCAATAGT 1115
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 591 AGACCAGGCTATTTCAAAAGGACTCCAGATAGAGACAGATGGTACTATGAGATCAATTGT 650
Query 1116 GGCTAGTTACTTCAGGTGCAATGCGGTTGATAAGCTTGCCAAATTCGTGCAGCGTGCAAA 1175
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 651 GGCTAGTTACTTCAGGTGCAATGCGGCTGATAAGCTTGCCAAATTCATGCAGCGTGCAAA 710
Query 1176 CTCTGCTGGATGGAAAATGAGCAGGTCTATGTTCCATGGCTTAATGATCATGTATGGATC 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CTCTGCTGGATGGAAAATGAGCAGGTCTATGTTCCATGGCTTAATGATCATGTATGGATC 770
Query 1236 TCAAAAGCGTTTTAAAGAGATGGAAAACGTCCTCTCTGAAATGGAAAGCTTTAAAATAAG 1295
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 771 TCAAAAGCGTTTTAAAGAGATGGAAGACGTCCTCTCTGAAATGGAAAGCTTTAACATAAG 830
Query 1296 CCGGTCCAAGAAGACGCTTTGTATTCTGCTTAGAGTATACGCAGCAACGCATGGACAGGA 1355
||||||||||||||| ||||| ||||||| |||||||||||||||| |||||||||||||
Sbjct 831 CCGGTCCAAGAAGACTCTTTGCATTCTGCATAGAGTATACGCAGCAGCGCATGGACAGGA 890
Query 1356 GCATAAGGTTAATCAAGTCGCAGGAATGATGTTAAAGCATGGACATGA 1403
|||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 891 ACATAAGGTCAATCAAGTCGCAGGAATGATGTTAAAGAATGGACATGA 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64105882335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5