BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48010.1
Length=2115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935792 jgi|Araly1|935792|scaffold_403780.1 2894 0.0
Ahg910879 jgi|Araly1|910879|Al_scaffold_0001_1133 52.8 1e-05
> Ahg935792 jgi|Araly1|935792|scaffold_403780.1
Length=1883
Score = 2894 bits (1567), Expect = 0.0
Identities = 1781/1883 (95%), Gaps = 20/1883 (1%)
Strand=Plus/Plus
Query 84 ATTAGATGTTGTTTCTCCGTCGAATCGCCGTCGTCTTCTTTGTCTTCACCTCTTTCTCCG 143
|||||||| ||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 17 ATTAGATGCTGTTTCTCCGTGGAATCGCCGTCGTCCTCATTCTCTTCACCTCTTTCTCCG 76
Query 144 CCGCTCAGAACTCCACGTGTCCTCTGGACTTTTCCGTCCTTGAACCGTTCCGGCGTCCGA 203
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 77 CCGCTCAGAACTCCACGTGTCCTCTGGACTTTTCCGTCCTCCAACCTTTCCGGCGTCCGA 136
Query 204 AACCCGATGGCGCCACCACCTGCCAGTACCTCCTCCAAGGGCTACGCCTCCTCTACTCTC 263
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 137 AACCCGATGGCGCCACCACCTGCCAGTACCTCCTCCAAGGGCTACGCCTCCTTTACTCTC 196
Query 264 ACCATCTCCGTCAGACGGGTTCCTTTCTCCCGCCACCTGAGTCTGCTGCTTCTTGCTGGG 323
|||||||||||||||||||||||||||||||||||||||| |||||| | || |||||||
Sbjct 197 ACCATCTCCGTCAGACGGGTTCCTTTCTCCCGCCACCTGACTCTGCTCCCTCCTGCTGGG 256
Query 324 CTGCTCTCCAGTCTTCCGTCGCCGGTTTCCTCCCTCGCTTTGACGTCCGATCCACCTGCG 383
||||||||||||||||| ||||||| |||||||||||||| |||||||| |||||||| |
Sbjct 257 CTGCTCTCCAGTCTTCCATCGCCGGATTCCTCCCTCGCTTCGACGTCCGGTCCACCTGTG 316
Query 384 GTTTCCAGACGCCGTGGATTTCGCAGGGGTGCATGGACATCACCACCAGGTCTCAATTCG 443
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 317 GTTTCCAGACGCCGTGGATTTCGCAGGGGTGCATGAACATCACCACCAGGTCTCAATTCG 376
Query 444 AATCCCTTATCCCTAACTCCTCCCTCGCCACCACCGCCATGCGCTGTAACACCTCTCTCG 503
||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 377 AATCCCTAATCCCTAATTCCTCCCTCACCACCACCGCCATGCGCTGTAACACCTCTCTCG 436
Query 504 AGAGCAATACCCCTTGCGCCTCCTGCACTCAGAGCCTCTCCGCGTTTCAGCCCTATCTCT 563
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 437 AGAGCAACACCCCTTGCGCCTCCTGCACTCAGAGCCTCTCCGCGTTTCAGCCCTTTCTCA 496
Query 564 CCGGTCCATCCCTCGGTAATGTCTCCGACTGTGCTTCTTTTCCCTCTATCTACGCCGCTG 623
|||| || |||||||| || |||||| |||||| ||||||||||||| ||||||||||||
Sbjct 497 CCGGACCTTCCCTCGGCAACGTCTCCAACTGTGATTCTTTTCCCTCTGTCTACGCCGCTG 556
Query 624 CTTTCGCCAATTCCTTGGGCCCCACCGACAAAGGCACCGCCAAATGCTTGTTTCAGCTCG 683
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 557 CTTTCGCCAATTCCTACGGTCCCACCGACAAAGGCACCGCCAAATGCTTGTTTCAGCTCG 616
Query 684 ATTTGGCTTCTCCCACTAGCTCCGG---T-GCTAACAAAGTCAAAGTTCTAGTTTCTTCT 739
||||||||||| | |||||||||| | || ||| | ||||| |||| | | ||||
Sbjct 617 ATTTGGCTTCT--C-CTAGCTCCGGTAATGGCAAACTCA-TCAAAATTCT--TGT-TTCT 669
Query 740 TTCTCTGTTTTGCTCGTCGCCTCTGTTCTGGTTATCACCGCTTGGTTCTGGTACTGCCGG 799
|| ||||| |||||||| ||||||| |||||||| ||||||||| |||||||||||||||
Sbjct 670 TTATCTGTCTTGCTCGTTGCCTCTGCTCTGGTTACCACCGCTTGCTTCTGGTACTGCCGG 729
Query 800 AGGAAGAAAAGCAAGCTTCTCAAGCCTCGGGATACTAGTTTAGAAGCTGGCACGCAGTCT 859
||| | ||||| || ||||||||||||||| |||||||||||||||||||| |||
Sbjct 730 AGG-A-AAAAG-AA------CAAGCCTCGGGATACCAGTTTAGAAGCTGGCACGCAATCT 780
Query 860 AGACTTGATTCCATGAGCGAGAGCACCACTCTTGTCAAATTCAGCTTCGACGAGATCAAG 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGACTTGATTCCATGAGCGAGAGCACCACTCTTGTCAAATTCAGCTTCGACGAGATCAAG 840
Query 920 AAAGCCACCAACAATTTCTCACGCCACAACATCATTGGCCGGGGAGGTTACGGGAACGTC 979
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 841 AAAGCCACCAACAATTTCTCGCGCCACAACATCATTGGCAGGGGAGGTTACGGGAACGTC 900
Query 980 TTCAAGGGCGCCCTGCCCGACGGCACCCAGGTTGCCTTCAAGAGGTTCAAGAACTGTTCT 1039
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTCAAGGGCGTCTTGCCCGACGGCACCCAGGTTGCCTTCAAGAGGTTCAAGAACTGTTCT 960
Query 1040 GCTGGAGGGGACGCCAACTTCGCTCATGAGGTCGAGGTCATCGCCAGCATCCGCCACGTC 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCTGGAGGGGACGCCAACTTCGCTCATGAGGTCGAGGTCATCGCCAGCATCCGCCACGTC 1020
Query 1100 AATCTCCTTGCCCTCAGAGGCTACTGTACTGCAACCACGCCCTATGAAGGTCACCAGAGG 1159
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1021 AATCTCCTTGCCCTCAGAGGCTACTGTACAGCAACCACGCCCTATGAAGGTCACCAGAGG 1080
Query 1160 ATCATTGTCTGTGATCTTGTCAGTAACGGTAGCCTTCATGACCATCTCTTTGGCGACTTG 1219
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1081 ATCATAGTCTGTGATCTTGTCAGCAACGGTAGCCTTCATGACCATCTCTTTGGAGACTTG 1140
Query 1220 GAGGCTCAGCTTGCCTGGCCTCTTAGGCAGAGGATCGCCCTTGGCATGGCCAGAGGACTG 1279
|||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1141 GAGGCTCAGCTTCCCTGGCCTCTCAGGCAGAGGATCGCACTTGGCATGGCCAGAGGGCTG 1200
Query 1280 GCTTATCTACACTACGGCGCACAACCCTCCATCATCCACAGGGATATCAAGGCCAGCAAC 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GCTTATCTACACTACGGCGCACAACCCTCCATCATCCACAGGGATATCAAGGCCAGCAAC 1260
Query 1340 ATTCTCTTGGACGAGAGGTTTGAGGCCAAGGTTGCGGATTTCGGGCTGGCCAAGTTCAAC 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ATTCTCTTGGACGAGAGGTTTGAGGCCAAGGTTGCGGATTTCGGGCTGGCCAAGTTCAAC 1320
Query 1400 CCCGAAGGAATGACTCATATGAGCACGCGGGTCGCAGGCACTATGGGATACGTTGCTCCA 1459
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1321 CCCGAAGGAATGACGCATATGAGCACGCGGGTCGCAGGCACAATGGGGTACGTGGCTCCA 1380
Query 1460 GAGTACGCACTGTACGGGCAACTGACTGAGAAAAGCGACGTGTACAGCTTTGGGGTGGTG 1519
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1381 GAGTACGCACTGTACGGGAAACTGACTGAGAAAAGCGACGTCTACAGCTTTGGGGTGGTG 1440
Query 1520 CTTCTAGAGCTTCTGAGCAGGAGAAAGGCGATTGTGACAGACGAGGAGGGGCAGCCTGTG 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CTTCTAGAGCTTCTGAGCAGGAGAAAGGCGATTGTGACAGACGAGGAGGGGCAGCCTGTG 1500
Query 1580 TCGGTGGCAGACTGGGCGTGGTCGCTGGTAAGAGAAGGCCAGACATTGGATGTGGTGGAA 1639
||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 1501 TCGGTGGCAGACTGGGCGTGGTCGCTGGTGAGGGAAGGCCAGACACTGGATGTGGTGGAG 1560
Query 1640 GACGGGATGCCAGAGAAGGGACCCCCAGAGGTTCTGGAGAAGTATGTGCTGATAGCAGTG 1699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GACGGGATGCCAGAGAAGGGACCCCCAGAGGTTCTGGAGAAGTATGTGCTGATAGCAGTG 1620
Query 1700 CTGTGCTCTCACCCTCAGCTCCACGCAAGGCCAACAATGGATCAAGTGGTGAAAATGCTG 1759
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CTGTGCTCCCACCCTCAGCTCCACGCAAGGCCAACAATGGATCAAGTGGTGAAAATGCTG 1680
Query 1760 GAGAGCAATGAGTTCACTGTTATAGCCATACCTCAACGGCCAATCCCTCTGGTGGCTTGT 1819
||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1681 GAGAGTAATGAGTTCACTGTTATATCCATACCTCAACGCCCAATCCCTCTGGTGGCTTGT 1740
Query 1820 AGGGAAGAGATTGACCGCTCTGTTAGTAGCAGCAGTGGCTCAGGGAAGCTCACTAGCCCC 1879
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1741 AGGGAAGAGATTGACCGCTCTGTTAGTAGCAGCAGCGGCTCCGGAAAGCTCACTAGCCCC 1800
Query 1880 ACGGGATATCAGGCCTTCTCATTCGGAGGTGATGGCCCCTCAGGGAACACGAATACCACT 1939
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 1801 ACGGGATATCAGGCCTTCTCCTTCGGAGGTGATGGACCCTCAGGGAACACAAATACCACT 1860
Query 1940 TAGATGAGATATGTATGTTGTAG 1962
||| ||||| |||||||||||||
Sbjct 1861 TAGCTGAGAGATGTATGTTGTAG 1883
> Ahg910879 jgi|Araly1|910879|Al_scaffold_0001_1133
Length=2469
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1328 AAGGCCAGCAACATTCTCTTGGACGAGA 1355
||||||||||||||||||||||||||||
Sbjct 1897 AAGGCCAGCAACATTCTCTTGGACGAGA 1924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79570521805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5