BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48020.2
Length=1751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483991 jgi|Araly1|483991|fgenesh2_kg.4__3051__AT2G48020.1 2549 0.0
Ahg488771 jgi|Araly1|488771|fgenesh2_kg.6__1905__AT5G18840.1 117 3e-25
> Ahg483991 jgi|Araly1|483991|fgenesh2_kg.4__3051__AT2G48020.1
Length=1739
Score = 2549 bits (1380), Expect = 0.0
Identities = 1547/1623 (95%), Gaps = 29/1623 (2%)
Strand=Plus/Plus
Query 121 AGGCTTCGTCTCTTTTGCAATTTTTGAGTTAGCCAAGTGCTCAAGGGAGATACATAATAC 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 128 AGGCTTCGTCTCTTTTGCAA-TTTTGAGTTAGCCAAGTGCTCAAGGGAGATACATAATAC 186
Query 181 CTGAAGATGTCCAAGGC---AAGTGATGCCGTCAGAGAACCATTGGTGGACAAGAATATG 237
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CTGAAGATGTCAAAGGCAAAAAGTGATGCCGTCAGAGAACCATTGGTGGACAAGAATATG 246
Query 238 GCTGGATCAAAACCAGACCAGCCGTGGATGGTTTATCTCAGCACATTCGTTGCGGTCTGT 297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 247 GCTGGATCAAAACCAGACCAGCCGTGGATGGTTTATCTCAGCACATTTGTTGCGGTCTGT 306
Query 298 GGTTCTTTTGCGTTCGGTTCTTGTGCGGGATACTCTTCACCTGCTCAGGCTGCAATTAGG 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GGTTCTTTTGCGTTTGGTTCTTGTGCGGGATACTCTTCACCTGCTCAGGCTGCAATTAGG 366
Query 358 AATGACCTTTCATTGACTATAGCTGAGTTTTCACTCTTTGGTTCTTTACTAACTTTTGGC 417
|||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 367 AATGACCTTTCACTGACTATAGCTGAGTTTTCACTCTTTGGCTCTTTGCTAACTTTTGGC 426
Query 418 GCAATGATCGGTGCTATAACAAGCGGGCCTATAGCTGATTTAGTTGGAAGAAAGGGGGCG 477
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 427 GCAATGATTGGCGCTATAACAAGCGGGCCTATAGCTGATTTGGTTGGAAGAAAGGGGGCG 486
Query 478 ATGAGAGTTTCCTCTGCATTTTGTGTAGTCGGGTGGCTAGCAATCATCTTTGCCAAGGGA 537
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 487 ATGAGAGTTTCCTCTGCATTTTGTGTAGTCGGGTGGCTAGCAATCTTCTTTGCCAAGGGA 546
Query 538 GTAGTGGCTCTGGACCTTGGAAGACTGGCAACGGGATATGGAATGGGAGCATTTTCCTAT 597
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 547 GTAGTGGCTCTGGACCTCGGAAGACTGGCAACGGGATATGGAATGGGAGCATTCTCCTAT 606
Query 598 GTGGTGCCAATCTTTATAGCAGAAATTGCACCTAAAACTTTCAGAGGGGCTCTAACCACA 657
||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 607 GTGGTACCAATCTTTATAGCCGAAATTGCACCTAAAACTTTCCGAGGGGCTCTAACCACA 666
Query 658 CTGAACCAGATTCTGATCTGCACTGGAGTGTCGGTTTCCTTCATCATAGGCACACTAGTG 717
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTGAACCAGATTTTGATCTGCACTGGAGTGTCGGTTTCCTTCATCATAGGCACACTAGTG 726
Query 718 ACGTGGAGAGTCTTGGCATTAATAGGAATCATCCCATGCGCTGCCTCCTTCCTTGGCCTC 777
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 727 ACGTGGAGAGTCTTAGCATTGATAGGAATCATCCCATGCGCTGCCTCCTTTCTTGGCCTC 786
Query 778 TTTTTTATCCCTGAGTCTCCAAGATGGCTGGCAAAAG-TGGGGCGTGATACGGAGTTTGA 836
||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||
Sbjct 787 TTTTTTATCCCTGAGTCTCCAAGATGGTTGGC-AAAGATGGGGCGTGATTCGGAGTTTGA 845
Query 837 AGCTGCACTGAGGAAGCTCCGTGGGAAGAAGGCTGATATTTCGGAGGAGGCAGCAGAGAT 896
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 846 AGCTTCACTGAGGAAGCTCCGTGGGAAGAAGGCTGATATTTCGCAGGAGGCAGCAGAGAT 905
Query 897 CCAGGATTATATCGAAACTCTGGAAAGGCTACCGAAAGCCAAGATGCTGGATTTGTTTCA 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TCAGGATTATATCGAAACTCTGGAAAGGCTACCGAAAGCCAAGATGCTGGATTTGTTTCA 965
Query 957 GAGGAGATACATACGCTCTGTTCTTATAGCTTTCGGGTTGATGGTGTTTCAGCAGTTTGG 1016
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 966 GAGGAGATACATACGCTCTGTTCTTATAGCTTTTGGGTTGATGGTGTTTCAGCAGTTTGG 1025
Query 1017 AGGAATCAACGGAATATGTTTCTACACAAGCTCGATATTTGAGCAAGCAGGTTTTCCCAC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AGGAATCAACGGAATATGTTTCTACACAAGCTCGATATTTGAGCAAGCAGGTTTTCCCAC 1085
Query 1077 AAGACTTGGGATGATAATATATGCTGTTCTTCAGGTGGTAATCACTGCGCTTAATGCACC 1136
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1086 AAGACTTGGGATGATAATATACGCTGTTCTTCAGGTGGTAATCACTGCGCTTAATGCACC 1145
Query 1137 GATAGTTGACAGAGCCGGAAGAAAACCATTGCTACTGGTTTCTGCAACAGGGTTAGTGAT 1196
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1146 GATAGTTGACAGAGCCGGAAGAAAACCGTTGCTACTGGTTTCTGCAACAGGGTTAGTGAT 1205
Query 1197 AGGCTGTTTGATAGCAGCGGTTTCTTTCTATCTCAAGGTTCACGACATGGCGCACGAAGC 1256
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 1206 AGGCTGTTTGATAGCAGCGGTCTCTTTCTATCTCAAGGTTCACGACATGGCACGCGAAGC 1265
Query 1257 AGTCCCAGTCCTGGCTGTTGTTGGTATAATGGTGTACATAGGATCGTTTTCAGCAGGAAT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 AGTCCCAGTCCTGGCTGTTGTTGGTATAATGGTGTACATAGGATCGTTTTCAGCAGGAAT 1325
Query 1317 GGGAGCAATGCCGTGGGTGGTCATGTCTGAGATATTTCCCATAAACATAAAAGGAGTAGC 1376
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 GGGGGCAATGCCGTGGGTGGTCATGTCTGAGATATTTCCCATAAACATAAAAGGAGTAGC 1385
Query 1377 AGGAGGCATGGCGACGCTGGTGAACTGGTTTGGAGCGTGGGCTGTTTCTTACACTTTCAA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 AGGAGGCATGGCGACGCTGGTGAACTGGTTTGGAGCGTGGGCTGTTTCTTACACTTTCAA 1445
Query 1437 CTTCCTCATGTCCTGGAGCTCTTACGGAACTTTCCTCATTTACGCTGCCATCAACGCGCT 1496
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1446 CTTCTTCATGTCCTGGAGCTCTTACGGTACTTTCCTCATTTACGCTGCCATCAACGCGCT 1505
Query 1497 GGCCATTGTCTTCGTCATTGCCATCGTGCCTGAGACAAAAGGGAAGACATTGGAGCAGAT 1556
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 1506 GGCCATTGTCTTCGTCATTGCCATCGTACCTGAAACGAAAGGGAAGACATTGGAGCAGAT 1565
Query 1557 CCAAGCTATAGTCAATCCATAGCTCAAACAC-T-T--------CCTAGATGTT-CGTTTC 1605
|||||| ||||||||||||||||||||||| | | |||||||||| ||| ||
Sbjct 1566 CCAAGCCGTAGTCAATCCATAGCTCAAACACATGTTATTATTTCCTAGATGTTTCGTGTC 1625
Query 1606 TATTAGCCAGCT-GGGACATAAATT-GCAATCTTGGATCTCTTTGCTTTTATGATTCTTT 1663
|||| | | || ||||||| || | ||||||||| ||||||||||||||| ||||||||
Sbjct 1626 TATT--C-A-CTTGGGACATTAAGTAGCAATCTTGAATCTCTTTGCTTTTAAGATTCTTT 1681
Query 1664 ACT-GAGTTCAATTGTTATCACTCTCTCTATTTCTAATCTCTTCTTAATGAACTTTGGAC 1722
||| | | | ||||||||| |||||||||||||||| |||||||| ||| ||||||||
Sbjct 1682 ACTTG-G---A-TTGTTATCAATCTCTCTATTTCTAATGTCTTCTTATTGAGCTTTGGAC 1736
Query 1723 TTC 1725
|||
Sbjct 1737 TTC 1739
> Ahg488771 jgi|Araly1|488771|fgenesh2_kg.6__1905__AT5G18840.1
Length=1653
Score = 117 bits (63), Expect = 3e-25
Identities = 120/148 (81%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 1312 GGAATGGGAGCAATGCCGTGGGTGGTCATGTCTGAGATATTTCCCATAAACA-TAAAAGG 1370
||||||||| | | || |||||| | ||||||||||||||||| ||||||| ||| ||
Sbjct 1239 GGAATGGGACCTGTTCCTTGGGTGATAATGTCTGAGATATTTCCGATAAACATTAAGGGG 1298
Query 1371 AGTAGCAGGAGGCATGGCGACGCTGGTGAACTGGTTTGGAGCGTGGGCTGTTTCTTACAC 1430
| | |||||| || | | | || ||||| |||| || || |||||||||||||||||
Sbjct 1299 A-TCGCAGGAAGCTTAGTGGTACTAGTGAATTGGTCCGGTGCTTGGGCTGTTTCTTACAC 1357
Query 1431 TTTCAACTTCCTCATGTCCTGGAGCTCT 1458
|||||||||||||||| ||||||||||
Sbjct 1358 TTTCAACTTCCTCATGAGCTGGAGCTCT 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65705672625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5