BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48030.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322443 jgi|Araly1|322443|fgenesh1_pm.C_scaffold_4002500 1917 0.0
> Ahg322443 jgi|Araly1|322443|fgenesh1_pm.C_scaffold_4002500
Length=1335
Score = 1917 bits (1038), Expect = 0.0
Identities = 1255/1351 (93%), Gaps = 50/1351 (4%)
Strand=Plus/Plus
Query 161 ATGTTGAACCTCATTGCTTTCCTCCGCCGTCGTCTCCGCCGTCCCCGGAAAGCCAGAATC 220
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGTTGAACCTCATTGCTTTCCTCCGCCGTCGTCTCCGCCGCCCCCGGAAAGCCAGAATC 60
Query 221 TCCGTCAACCACCACCACCTCTCAGTTGATTCTTCTCCTGAGACTCATCATCATCA--A- 277
|||||| | ||||||||| ||||| |||| ||||||| ||||||||||||||||| |
Sbjct 61 TCCGTC-A--ACCACCACCGCTCAGGTGATACTTCTCCGGAGACTCATCATCATCATCAG 117
Query 278 AATGG---C--T---TTT-CATCGGCAGCCGCCATCCACCCAAACCCGGACAAAACCATC 328
| ||| | | ||| ||||||||||||| || |||||||||||||| |||||||||
Sbjct 118 AGTGGTACCAATGGGTTTCCATCGGCAGCCGCTATTCACCCAAACCCGGAGAAAACCATC 177
Query 329 ACAGTGGCCACCTTTAACGCTGCTATGTTCTCCATGGCTCCCGCCGTCCCTAGCAACAAG 388
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 178 ACAGTGGCCACCTTTAACGCTGCTATGTTCTCCATGGCTCCCGCCGTCCCAAACAACAAG 237
Query 389 GGCTTGCCATTCCGGTCCAAGTCTACGGTTGACCGCCCCAAGAGCATTCTCAAGCCCATG 448
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 238 GGTTTGCCATTCCGGTCCAAGTCAACCGTTGACCGCCCCAAGAGCATTCTCAAGCCCATG 297
Query 449 AACGCCGCCG-CATCTCCTACTCACGACTCTAGAAAGCAACAGAGGTTTGCCAAATCCAG 507
|||||||||| || |||||||||| ||||| ||||| ||| |||||||||||||||| ||
Sbjct 298 AACGCCGCCGCCA-CTCCTACTCATGACTCCAGAAAACAAGAGAGGTTTGCCAAATCAAG 356
Query 508 GCCTAGGAGAGTCTCCATCAATCTCCCCGACAACGAGATCAGCCGCCAGCTCAGCTTCCG 567
||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GCCTA-G-G-GTCTCCATCAATCTCCCCGACAACGAGATCAGCCGCCAGCTCAGCTTCCG 413
Query 568 GGAGGATCCACAGCACTCTCCCCTCA-G---G----------C-CCGGCGAGATCGGTCT 612
||||||||||||||||||||| |||| | | | |||||||| |||||||
Sbjct 414 GGAGGATCCACAGCACTCTCCTCTCAGGCCTGCTCTCTCTTTCTCCGGCGAGGTCGGTCT 473
Query 613 CCGGAGCACCAGAACGGCTCTGGAAGTGCTGAGTGAGCTAGACGCAGACGTGCTGGCTCT 672
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 474 CCGGAGCACCAGAACGGCTCTGGAAGTGCTGAGGGAGCTAGACGCAGACGTGCTGGCTCT 533
Query 673 TCAAGACGTCAAGGCGGACGAGGCTGACCAAATGAGACCGCTCTCCGATCTCGCTGCGGC 732
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 534 GCAAGACGTCAAGGCTGACGAGGCTGACCAAATGCGACCGCTCTCCGATCTCGCCGCCGC 593
Query 733 GCTGGGGATGAATTACGTCTTCGCCGAGAGCTGGGCGCCGGAGTACGGCAACGCCATTCT 792
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 594 GCTGGGGATGAATTACGTCTTCGCTGAGAGCTGGGCGCCGGAGTACGGCAACGCCATTCT 653
Query 793 CTCTAAGTGGCCCATCAAAAGCTCCAATGTTCTAAGAATCTTCGACCACACTGATTTCAG 852
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 654 CTCTAAGTGGCCCATCAAAAGCTCCGATGTTCTAAGAATCTTCGACGACACTGATTTCAG 713
Query 853 GAACGTGTTGAAGGCGAGCATAGAGGTTCCCGGGAGCGGGGAAGTGGAGTTTCACTGCAC 912
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 714 GAACGTGTTGAAGGCGAGCATAGAGGTTCCGGGGAGCGGGGAAGTGGAGTTTCACTGCAC 773
Query 913 TCATCTGGATCACTTGGACGAGAAGTGGAGAATGAAGCAAGTCGATGCCATTATCCAATC 972
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 774 TCATCTTGATCACTTGGACGAGAAGTGGAGAATGAAGCAAGTCGATGCCATTATCCGATC 833
Query 973 CACCAACGTACCGCACATACTCGCTGGTGCTCTCAATTCTCTCGACGAATCCGATTATTC 1032
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CACCAACGTACCCCACATTCTCGCTGGTGCTCTCAATTCTCTCGACGAATCCGATTATTC 893
Query 1033 TCCTGAGAGATGGACCGACATCGTCAAGTATTACGAAGAGATGGGTAAGCCAATACCAAA 1092
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 894 TCCTGAGAGATGGACCGACATCGTCAAGTATTACGAAGAGATGGGTAAGCCGATACCAAA 953
Query 1093 AGCACAAGTGATGAGATTCTTAAAGAGCAAAGAATACACTGACGCTAAGGACTTTGCTGG 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 954 AGCACAAGTGATGAGATTCTTAAAGAGCAAAGAATACACTGACGCTAAGGACTATGCTGG 1013
Query 1153 AGAATGCGAATCTGTGGTTGTTGTCGCCAAAGGCCAAAGTGTGCAGGGGACATGCAAGTA 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AGAATGCGAATCTGTGGTTGTTGTCGCCAAAGGCCAAAGTGTGCAGGGGACATGCAAGTA 1073
Query 1213 CGGGACACGCGTGGACTACATACTTGCTTCCTCCGATTCACCGTACCGGTTCGTGCCAGG 1272
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1074 CGGGACACGCGTGGACTACATACTGGCTTCCTCGGATTCACCGTACCGGTTCGTGCCAGG 1133
Query 1273 GTCGTATTCCGTGTTGTCTTCCAAAGGAACCTCGGACCATCACATAGTCAAAGTCGATGT 1332
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1134 GTCGTATTCGGTGTTGTCTTCCAAAGGGACCTCGGACCATCACATAGTCAAAGTCGATGT 1193
Query 1333 TGTAAAAGCTACATCGATCAACGTCAACGAGCAGGAGCAGCGACCGATAAGATCACATAA 1392
||||||||||| | ||||||||||| || | | ||||||||||||||||| |||| |
Sbjct 1194 TGTAAAAGCTAGAGCGATCAACGTC---GA-C-G-AGCAGCGACCGATAAGA-CACA-A- 1244
Query 1393 GCTGCAGAGAATTAC---AGCGAC---TACGTATAATAATAACTCGTCTCTCACAAAGGC 1446
|||||||||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1245 GCTGCAGAGAGTTACTGCAGCGACGACTACGTATAATAATAACTCGTCTCTCACAAAGGC 1304
Query 1447 CTCGTGGAGGACACACTACTATAAAGCATGA 1477
||||||||||||||| ||||||||||| |||
Sbjct 1305 CTCGTGGAGGACACATTACTATAAAGCGTGA 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5