BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48070.3
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902862 jgi|Araly1|902862|Al_scaffold_0004_3512 726 0.0
> Ahg902862 jgi|Araly1|902862|Al_scaffold_0004_3512
Length=594
Score = 726 bits (393), Expect = 0.0
Identities = 525/583 (90%), Gaps = 32/583 (5%)
Strand=Plus/Plus
Query 47 ATGAGTTGGTCTCTCTGCAG----CA--CCCATGGGGTCTCCTCTTCCATAGCTCTCACT 100
||||||||| |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTGGCCTCTCTGCAGCACCCATTCCCATGGGGTCTCCTCTTCCATAGCTCTCACT 60
Query 101 TATGGCTTTCGCCATAGAAGAAGATCCACCTTCCGTATTTTCGCCACCTCTGACGGATTA 160
||||| ||||||||| |||||||| || ||||| |||| ||||| || | | |
Sbjct 61 TATGGGTTTCGCCAT---AGAAGATCTACTTTCCGGATTTGCGCCA-CT-T--C----T- 108
Query 161 GAACCCAAGGACGACCCGCCGGAATCTCCTCTCCCTTCCTCA------T---CCTCTGCT 211
|| ||||| ||||| |||||||||||||||||||||||| | ||||||||
Sbjct 109 GACCCCAAAGACGA---ACCGGAATCTCCTCTCCCTTCCTCATCCTCTTCCCCCTCTGCT 165
Query 212 CTCGGTAAAGACTTGAAAAAGGTTGTTAACAAGACTGCTGCAACCTTTGCCCCTAGAGCT 271
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 166 CTCGGTAAAGACTTGAAAAAGGTAGTTAACAAGACTGCAGCAACCTTTGCCCCTAGAGCT 225
Query 272 TCCACCGCCAGTAAAAACCCTGCTCTCCCTGGAACTACTCTTTACAAAGTTTTTGAGGTT 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 TCCACCGCCAGTAAAAACCCTGCTCTCCCTGGAACTACTCTTTACAAAGTTTTTGAGGTT 285
Query 332 CAAGGCTATGCATCGATGTTCCTCGGAGGTGTCCTTTCTTTCAACCTCCTCTTTCCCTCC 391
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 286 CAAGGCTATGCCTCAATGTTGCTCGGAGGTGTCCTTTCTTTCAACCTCCTCTTTCCCTCC 345
Query 392 AGCGAACCTGATTTATGGAGGTTGATGGGCATGTGGTCCATTTGGATGTTCACTATTCCT 451
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 346 AATGAACCTGATTTATGGAGGTTGATGGGGATGTGGTCCATTTGGATGTTCACTATTCCT 405
Query 452 TCTCTTCGGGCACGAGACTGTCCAAGT-AAAGAGAAAGAGGCTCTTAACTACCTCTTTCT 510
|||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 406 TCTCTTCGGGCACGAGACTGTCCAC-TCAAAGAGAAAGAGGCTCTTAACTACCTATTTCT 464
Query 511 CATCGTCCCCTTGCTCAATGTTGCTATTCCCTTCTTTTGGAAATCATTTGCTCTTGTCTG 570
||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 465 GATCATCCCGTTGCTCAATGTTGCTATTCCCTTCTTTTGGAAGTCATTTGCTCTTGTCTG 524
Query 571 GTCTGCTGACACGGTTGCCTTCTTTGCTATGTATGCCTGGAAG 613
|||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 525 GTCTGCTGACACTGTTACCTTCTTTGCAATGTATGCCTGGAAG 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28820925252
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5