BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48075.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483999 jgi|Araly1|483999|fgenesh2_kg.4__3059__AT2G48075.1 1037 0.0
> Ahg483999 jgi|Araly1|483999|fgenesh2_kg.4__3059__AT2G48075.1
Length=801
Score = 1037 bits (561), Expect = 0.0
Identities = 630/663 (95%), Gaps = 6/663 (1%)
Strand=Plus/Plus
Query 10 AAGCGTAGAATCAAAGCAAACCCGATATACC-ACTACTCATTTCTTCATATACACCAAAA 68
||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1 AAGAGTAGAATCAAAGCAAACCCGATAT-CCTACTACTCATTTCTTCATATACACCAAAA 59
Query 69 CCACTCCTCAAGCACAATAATCCTGGAGAGAAAAGAAAAATACCTTTCTGTTTCTGCAGT 128
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 60 CCACTCCTCAAGCACAAGAATCCTGGAGAGAAAAGAAAAATACTTTTCTGTTTCTGCAGT 119
Query 129 CTTCTTTTTGACAGAGAATGCACATAAGAGAGGATGATGACAGCATCAGCTCTCTGCGGC 188
|||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct 120 CTTCTTTTTGACAGAGAATGCACAGAAGAGAGGATGATGACAGCAGCAGCTCCCTGCGGC 179
Query 189 CTCGGGGCATTTGCCGTCGGCTGTTTCGATTTGTGGTGGCTAAACTATGGATATTAGGAG 248
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 180 CTCGGGGCATTTGCCGTCGGCTGCTTCGATTTGTTGTGGCTAAACTATGGATATTAGGAG 239
Query 249 ACAAAGAGATGAATGAAGATAAGCCTGAGAGGAACAAACTGATCAAGAAGGGATCAATGT 308
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 AGAAAGAGATGAATGAAGATAAGCCTGAGAGGAACAAACTAATCAAGAAGGGATCAATGT 299
Query 309 CTGACATCACTATTCATTTCAAGCAATTAGAAGACTCGGAGGATAACAATTCCCCTGCCT 368
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct 300 CTGACATCACTATTCATTTCAAGCAATTAGAAGACTCTGAGGATGACAATTCCCCTGGCT 359
Query 369 CGTCAAGTCCA-GAATCAGAGAGAGAGACAATGATTACACTAGTTAATGGTAGTAACGGC 427
||||||| ||| |||||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 360 CGTCAAG-CCAAGAATCAGAGAGAGAGACAGTGATCACACTAGCTAATGGTAGTAACGGC 418
Query 428 CCAAAGAAGAGGTTACAGGAGAACGG-GGAAAAGAGCATGCTGGGTGAGCCCAGCCCTAA 486
|||||||||||||||||| |||| || |||||||||||| ||||||||||| ||||||||
Sbjct 419 CCAAAGAAGAGGTTACAGAAGAA-GGTGGAAAAGAGCATCCTGGGTGAGCCGAGCCCTAA 477
Query 487 GCAACAAATCACTCAGCCTGAAGCAGGGAAACCACCACAGCCTCATAGACGCCTGGGGCC 546
||||||| |||||||||||||||||||||||||||||| |||||| ||||| ||||| ||
Sbjct 478 GCAACAAGTCACTCAGCCTGAAGCAGGGAAACCACCACCGCCTCAGAGACGTCTGGGCCC 537
Query 547 CCTACTAAATGATATAAATAAGAAATCAGATGCTTTTATCGAAAGTACACTCGAGAAGAT 606
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 538 CCTACTAAATGATATAAATAAGAAATCAGATGCTTTTATCGAGAGTACACTCGAGAAGAT 597
Query 607 GAGGAAAGGCTTAGCCTAGAACTAAACACATGAGCCTCCTTCTTCTCTCGCTTTCTCTGT 666
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 598 GAGGAAAAGCTTAGCCTAGAACTAAACACATGAGCCTCCTTCTTCTCTGGCTTTCTCTGT 657
Query 667 CGA 669
|||
Sbjct 658 CGA 660
Score = 204 bits (110), Expect = 1e-51
Identities = 128/137 (93%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 713 ACTCAATTCTTTTACTTTGTTTAAATTTACCAGCTGCATTCTTGATAACAAAACGTATAT 772
|||||||||||| | ||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 665 ACTCAATTCTTTAATTTTCTTTAAATTTACCAGCTGCATTCTTGATAAGAAAACATATAT 724
Query 773 GTACTCCCACTTGTATTTTGAACAATAATTCATCTCAGAACTTTAAGATTTACAAGAAAT 832
|||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 725 GTACTCGCACTTCTATTTTGAACAAAAATTCATCTCAGAACTTTATGATTTACAAGAAAT 784
Query 833 ATTCCTTAAGGGGCTAG 849
|||||||||||||||||
Sbjct 785 ATTCCTTAAGGGGCTAG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5