BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48080.1
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322448 jgi|Araly1|322448|fgenesh1_pm.C_scaffold_4002505 1399 0.0
> Ahg322448 jgi|Araly1|322448|fgenesh1_pm.C_scaffold_4002505
Length=1365
Score = 1399 bits (757), Expect = 0.0
Identities = 944/1025 (92%), Gaps = 49/1025 (5%)
Strand=Plus/Plus
Query 325 GATGATTCTCCCTCCAGCGACATCACTGATGGAGGATCCCGGGAAGAAG---AAACCCTC 381
|||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||
Sbjct 358 GATGATTCTCCCTCCAGCGACACCACTAATGGAGGATACCGGGAAGAAGACCAAACCCTC 417
Query 382 TCCATCTGTTGTAAGCACGAGGACGAATGTGAATCACGAGGAGCCTCACTCCTCAAGCAG 441
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCAATCTGTTGTAAGCACGAGGACGAATGTGAATCACGAGGAGCCTCACTCCTCAAGCAC 477
Query 442 TCCAAGCGTTTCTCGGCCAAGGAACATGTTAGAGGACATACGGCCAATGTTGTCAAAGGC 501
|||||||||||||| ||| | | | || |||| ||||||||||||||||||
Sbjct 478 TCCAAGCGTTTCTCCGCC-----A-A-G---GA--ACAT---GCCAATGTTGTCAAAGGC 522
Query 502 CTTAAACTCTACCAAGATGTCTTCACTCG-ACCTCAACTCTCCAAGCTTCTGGATTCTAT 560
|| ||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 523 CTCAAACTCTACGAAGATGTCTTCACTGGTA-CTCAACTCTCCAAGCTTCTGGATTCTAT 581
Query 561 TAATCAGCTCCGAGAGGCTGGTCGGAATCACCAACTTTCAGGGGAGACCTTCGTTCTGTT 620
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 582 TAATCAGCTCCGAGAGGCTGGTCGGAATCACCAACTTTCAGGGGAGACCTTTGTTCTGTT 641
Query 621 CAACAAGAACACCAAGGGAACCAAAAGAGAGCTTCTTCAGCTTGGAGTTCCTATTTTCGG 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CAACAAGAACACCAAGGGAACCAAAAGAGAGCTTCTTCAGCTTGGAGTTCCTATTTTCGG 701
Query 681 CAACACCACGGATGAACACTCTGTGGAACCTATCCCAACCCTTGTCCAAAGTGTTATCGA 740
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 702 CAACACCACGGATGAACACTCAGTGGAACCTATCCCAACCCTTGTCCAAAGTGTGATCGA 761
Query 741 CCATCTTCTTCAATGGCGTCTGATTCCTGAATACAAACGACCAAATGGCTGTGTGATCAA 800
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CCATCTTCTTCAATGGCGTGTGATTCCTGAATACAAACGACCAAATGGCTGTGTGATCAA 821
Query 801 CTTCTTCGATGAGGACGAACACTCTCAACCATTTCAGAAACCTCCTCACGTGGATCAACC 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 CTTCTTCGATGAGGACGAACACTCTCAACCATTTCAGAAACCTCCTCACGTGGATCAACC 881
Query 861 CATATCCACTCTTGTCTTGTCTGAATCAACCATGGTGTTTGGGCACAGACTCGGGGTCGA 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 CATATCCACTCTTGTCTTGTCTGAATCAACCATGGTGTTTGGGCACAGACTCGGGGTCGA 941
Query 921 TAACGATGGCAACTTCAGAGGCTCACTCACTCTCCCACTTAAGGAAGGGTCGTTGCTGGT 980
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 942 TAACGATGGCAACTTCAGGGGCTCACTCACTCTCCCACTAAAGGAAGGGTCGTTGCTGGT 1001
Query 981 GATGAGGGGTAACAGTGCAGATATGGCTAGGCATGTAATGTGTCCCTCGCCCAACAAAAG 1040
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1002 GATGAGGGGTAACAGCGCAGATATGGCCAGGCATGTAATGTGCCCCTCGCCCAACAAAAG 1061
Query 1041 AGTCGCAATCACCTTCTTCAAACTCAAACCGGACTCCGGTAAGGTCCAGCCGCCGCCCAC 1100
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1062 AGTCGCAATCACCTTCTTCAAACTCAAACCGGACTCCGGTAAGGTCCAGCCGCCCCCCAC 1121
Query 1101 CCTATGGAGACCAGGCACCCCTTCTCCTCTGG-T-G---A-TG--C-TAGCTCCG--G-- 1147
||||||| ||||||||||||| |||||| || | | | || | |||||||| |
Sbjct 1122 CCTATGGCGACCAGGCACCCCAGCTCCTCCGGCTTGCGGAATGGTCATAGCTCCGTTGGT 1181
Query 1148 ----C--GC-CC-------AAGAGGCTAGACGCTGGCACTGGAGTTTTCTTGCCGTGGAC 1193
| || || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1182 GATGCTAGCTCCGGCTCCCAAGAGGATAGACGCTGGCACTGGAGTTTTCTTGCCGTGGAC 1241
Query 1194 ACCGCCAGTGT-CAAGAAAACCAGCCAAGCATCTCCCGCCGCGTGTCCAGAGGCTGCGTC 1252
||||||||| | ||||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 1242 ACCGCCAGT-TACAAGAAAACCAACGAAGCATCTCCCGCCGCGAGTCCAGAGGCTGCGTC 1300
Query 1253 TCTTGTCATCATCAAAGTCAGTGGCAGATAGTGAGTCATCGTCGCCAGAGATAGGAGTGA 1312
||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1301 TCTTGTCATCAGCAAAGCCAGTGGCAGATCGTGAGGCATCGTCGCCAGAGATAGGAGTGA 1360
Query 1313 GTTGA 1317
| |||
Sbjct 1361 GCTGA 1365
Score = 444 bits (240), Expect = 1e-123
Identities = 284/304 (93%), Gaps = 8/304 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGAAACGCCGGCTTCTCCTCCTCTTCACCCTCCCGTTGTTCTTTTGTCCGATTCC 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCTGAAACGCCGGCTTCTCCTCCTCTTCACCCTCCCGTT---CTTTTGTCCGATTCC 57
Query 61 GCCGCCAAGGACGCCATGCTCACTTGGTTTCGCGGCGAGTTTGCGGCCGCCAACGCCATC 120
|||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 58 GCCGCCAAAGACACCATGCTCACTTGGTTTCGCGGCGAGTTTGCGGCCACCAACGCCATC 117
Query 121 ATCGATGCTCTCTGCGCTCACCTTATGCAGGCCTCCGGCGGATCCGCTCAATACGAGTCT 180
||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 118 ATCGATGCTCTATGCGCTCACCTTATGCAGGGCTCCGTCGGATCCGCTCAATACGAGTCT 177
Query 181 GTCATGGCAGCCCTTCATCGCCG-CAGGCTCAACTGGATCCCTGTCCTCCAGATGCAGAA 239
|||||||| |||||||||||||| | ||||||||| ||||| ||||||||||||||||||
Sbjct 178 GTCATGGCTGCCCTTCATCGCCGGC-GGCTCAACTAGATCCATGTCCTCCAGATGCAGAA 236
Query 240 GTACCATTCCATCTCTCAAGTCACCCTCCAGCTACAACAACATTTGGCTAAAGGCTTTCA 299
||||||||||||||||||| |||||||||||||||||||| || | | |||||||||||
Sbjct 237 GTACCATTCCATCTCTCAAATCACCCTCCAGCTACAACAA--TT-GACAAAAGGCTTTCA 293
Query 300 TCAT 303
||||
Sbjct 294 TCAT 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56868735785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5