BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48090.1
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484001 jgi|Araly1|484001|fgenesh2_kg.4__3061__AT2G48090.1 756 0.0
> Ahg484001 jgi|Araly1|484001|fgenesh2_kg.4__3061__AT2G48090.1
Length=551
Score = 756 bits (409), Expect = 0.0
Identities = 497/536 (93%), Gaps = 20/536 (4%)
Strand=Plus/Plus
Query 15 GTACTTCCCAAGGTGACATCCATGGCAAAGAACTCATCATCACAGAGTAGTAGCAAGAAG 74
|||||||||||| ||||||| ||||||||||| | |||||| |||||||||||||||||
Sbjct 1 GTACTTCCCAAGCTGACATCGATGGCAAAGAA--C-TCATCAGAGAGTAGTAGCAAGAAG 57
Query 75 AAGCAAGAAAACAGAGTGTGCGAGAAGATCTTCAGAGCAGTGACTAGTCCTGTCCGAACC 134
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 58 AAGCAAGAAAACAGAGTGTGCGAGAAGTTCTTCAGAGCAGTGACTAGTCCTGTCCGAACC 117
Query 135 GTTCGTCGCATCTCCACCAAATCTTCACCAGCAGAGGCTGTTCGCGTCAAATTTGCAGAG 194
||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 118 GTTCGCCGCATCTCCACCAAACCTTCACCAGCAGAGGCTGTTCCCGTCAAATTTGCAGAG 177
Query 195 ACATCGGCTAGGCCTAGGGCAGCCAAACCCATTACAAAGGTGGAACCGGTGATCGCTCGA 254
||| || || | | |||||||||||||||||||||| || |||||||||||||||||
Sbjct 178 ACACCGACT----C-A-GGCAGCCAAACCCATTACAAAGATGAAACCGGTGATCGCTCGA 231
Query 255 GTGGATACTACG-ATCAAAACGGACGAGAGGTTCACCGAGTATATAAAGAAAGCGAAGCT 313
||||| |||| | ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 232 GTGGAGACTA-GTATCAAAACGGACGAGAGGTTCACTGACTATATAAAGAAAGCGAAGCT 290
Query 314 GAAGATAAGGGCGATGACGAATGTCGGTGATATGATGAAGGAGGATGCGTGGGAGACAAG 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAAGATAAGGGCGATGACGAATGTCGGTGATATGATGAAGGAGGATGCGTGGGAGACAAG 350
Query 374 TGATGAAACAGATCAGACACGTCATGATCATCTTCACCACCATGTGCCTATCTCTCACGT 433
||| || |||||||||||||||||||||||| |||||| ||| || |||||||||||
Sbjct 351 TGA-GA--CAGATCAGACACGTCATGATCATCATCACCA---TGTCCCGATCTCTCACGT 404
Query 434 AGGTAGTAGTGGCCGGAGATCATCAGATCAGTTCTCTGAGTACATAAAGAAGGCAAAGAT 493
||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AGGAAGTAGTGG--G-AGATCATCAGATCAGTTCTCTGAGTACATAAAGAAGGCAAAGAT 461
Query 494 GAAGCTCAGTTCCTCTTCCACCATTGCTCGTGCTAACCCGACTTTCAAGTGATGGA 549
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GAAGCTCAGATCCTCTTCCACCATTGCTCGTGCTAACCCGACTTTCAAGTGATGGA 517
Score = 67.6 bits (36), Expect = 1e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 587 GAGAGATTGATATATATGTATATGTTTTGTGGTGTG 622
||||||||||||||||||||||||||||||||||||
Sbjct 516 GAGAGATTGATATATATGTATATGTTTTGTGGTGTG 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24017437710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5