BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48100.1
Length=1739
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484002 jgi|Araly1|484002|fgenesh2_kg.4__3062__AT2G48100.3 1583 0.0
Ahg317350 jgi|Araly1|317350|fgenesh1_pm.C_scaffold_3000366 147 4e-34
> Ahg484002 jgi|Araly1|484002|fgenesh2_kg.4__3062__AT2G48100.3
Length=1179
Score = 1583 bits (857), Expect = 0.0
Identities = 1003/1075 (93%), Gaps = 4/1075 (0%)
Strand=Plus/Plus
Query 245 TCGCTTTGATATTCCATGGATTCTCAGTTGAATCCTTCCAAGAGACGCAAGATAAGTGTC 304
|||||||||| |||||||||||||| || || | ||| ||||| ||| |||||||| |||
Sbjct 36 TCGCTTTGATTTTCCATGGATTCTCGGTCGATTTCTTTCAAGAAACGAAAGATAAGAGTC 95
Query 305 AGGCACAGATGCGTTGCGTGCTATAAGATGTTCAATAGACGAGAACACCTCGTTGAGCAC 364
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 96 AGGCACAGATGCGTAGCGTGCTACAAGATGTTCAATAGACGCGAACACCTCGTTGAGCAC 155
Query 365 ATGAAGATTTCCTACCACTCACTTCACCAGCCTCGCTGTGGGGTTTGCCTCAAGCACTGT 424
||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 156 ATGAAGATTGCCTACCACTCACTTCACCAGCCTCGTTGTGGGGTTTGCCTTAAGCACTGT 215
Query 425 AAATCCTTCGAATCCGTGAGGGAACACCTTAACGTTCCAGACCATCTTTCCAAAGGAAAC 484
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 216 AAATCCTTCGAATCTGTGAGGGAACACCTTAACGTTCCAGACCATCTTTTCAAAGGAAAC 275
Query 485 TGCAAAGCCATTTTCACTAAACGAGGCTGTACTCTCTGTCTTCAAATCTTTGAGGAGGCC 544
||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 276 TGCAAAGCCATTTTCTCTAAACGAGGCTGTACTCTTTGTCTTCAAGTCTTTGAGGAGGCC 335
Query 545 TTTGCTCTCGCCGAGCATAAAAACAAGTGTCACCTCTCCCCACCTCGTCCTCTTGGAACA 604
|||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 336 ATTGCTCTCGCGGACCATAAAAACAAGTGTCAGCTCTCCCCACCTCGTCCTCTTGGAACA 395
Query 605 TCTACCCAAAGGAATCCTTCTAGTTCAC-TTGCTGGTTCACGTCTCAAGGCTA-TGGCAC 662
||||||||||| ||||||||||| |||| || ||||||||||||||||||| | ||||||
Sbjct 396 TCTACCCAAAGAAATCCTTCTAGGTCACATT-CTGGTTCACGTCTCAAGGC-AGTGGCAC 453
Query 663 TTGACTGTGAAATGGTTGGTGGTGGTGCTGATGGGACTATTGATCAGTGCGCATCGGTTT 722
||||||||||||||||||||||||||| ||| || |||||||||||||||||||| ||||
Sbjct 454 TTGACTGTGAAATGGTTGGTGGTGGTGATGACGGCACTATTGATCAGTGCGCATCCGTTT 513
Query 723 GCCTGGTTGACGATGACGAGAATGTGATCTTCTCCACTCACGTTCAACCACTGCTCCCTG 782
||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||
Sbjct 514 GCCTGGTTGACGAAGACGAGAATGTGATCCTCTCCACTCACGTTCGACCACTACTCCCTG 573
Query 783 TCACCGATTACAGGCACGAGATAACTGGATTGACTAAGGAAGATTTGAAGGATGGTATGC 842
|||| ||||||||||||||| |||||||||||| | ||||||| ||||||||||||||||
Sbjct 574 TCACAGATTACAGGCACGAGGTAACTGGATTGAGTGAGGAAGACTTGAAGGATGGTATGC 633
Query 843 CACTTGAGCATGTACGAGAGAGAGTTTTTTCGTTCTTGTGCGGTGGACAGAATGATGGGG 902
|||||||| ||||||||| ||||||| ||||| || | ||||||||||| ||||||||||
Sbjct 634 CACTTGAGGATGTACGAGCGAGAGTTGTTTCGATCCTATGCGGTGGACATAATGATGGGG 693
Query 903 CTGGAAGGCTTCTTCTTGTTGGTCATGACCTTAGGCATGATATGAGTTGCTTGAAGCTTG 962
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 694 CTGGGAGGCTTCTTCTTGTTGGTCATGACCTTAGGCATGATATGAGTTGCTTGAATCTTG 753
Query 963 AATACCCTAGCCATTTGTTGAGAGACACAGCAAAATACGTGCCGTTGATGAAGACAAATC 1022
||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 754 AATACCCTAGCAATTTGTTGAGAGACACTGCAAAATATGTGCCGTTGATGAAGACAAATC 813
Query 1023 TTGTAAGCCAATCGCTCAAGTACCTCACAAAGTCATATCTCGGATACAAGATCCAGTGCG 1082
|||||||||||||||| | ||||||||||||||| |||||||||||||||||||| |||
Sbjct 814 TTGTAAGCCAATCGCTGAGGTACCTCACAAAGTCGTATCTCGGATACAAGATCCAAAGCG 873
Query 1083 GGAAGCACGAGGTTTACGAGGACTGTGTATCTGCGATGAGACTGTACAAGAGAATGCGGG 1142
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GGAAGCACGAGCCGTACGAGGACTGTGTATCTGCGATGAGACTGTACAAGAGAATGCGGG 933
Query 1143 ATCAAGAGCATGTTTGTAGTGGAAAGGCAGAAGGGAATGGTCTGAACTCGCGGAAACAGA 1202
|||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 934 ATCAAGAGCATGGGTGTAGTGGAAAGGGAGAAGGGAATGGTCTGAACTCGTGGAAACAGA 993
Query 1203 GCGATCTAGAGAAGATGAATGCGGAAGAGCTGTACCAAAAATCAACGTCAGAGTACCGGT 1262
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 994 GCGATCTAGAGAAGATGAAGGCGGAAGAGCTGTACCAAAACTCAACGTCAGAGTACCGGT 1053
Query 1263 GCTGGTGCCTTGACCGACTCAGCAATCCATGAAATGAAATCCCAATTTCTCTTTT 1317
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1054 GCTGGTGCCTTGACCGACTCAGCAATCCATGAAATGGAATCCCAAAGTCTCTTTT 1108
> Ahg317350 jgi|Araly1|317350|fgenesh1_pm.C_scaffold_3000366
Length=1836
Score = 147 bits (79), Expect = 4e-34
Identities = 107/120 (89%), Gaps = 3/120 (3%)
Strand=Plus/Minus
Query 1512 ATAAAGTCTGATGCATCTGAGGT-CTTGGAATCTGTTGCTCATAGTTGTGGATACCAGCA 1570
||||| ||| | | ||||| ||| ||||||||||||||||||| ||| ||||||||||||
Sbjct 708 ATAAAATCT-A-GGATCTGCGGTCCTTGGAATCTGTTGCTCATTGTTCTGGATACCAGCA 651
Query 1571 ACATCAAACATTATTACTTGTTTACCAAACCCACTCTCAGCTTCCATTTCATCAGTTTGA 1630
||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||
Sbjct 650 ACATCAAACATTATTACTTCTGGACCAAAACCACTCTCAGCTTCCATTTCTTCAGTTTGA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65248589685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5