BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48120.1
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484005 jgi|Araly1|484005|fgenesh2_kg.4__3065__AT2G48120.1 1666 0.0
> Ahg484005 jgi|Araly1|484005|fgenesh2_kg.4__3065__AT2G48120.1
Length=1175
Score = 1666 bits (902), Expect = 0.0
Identities = 1001/1047 (96%), Gaps = 14/1047 (1%)
Strand=Plus/Plus
Query 237 ATTTCTACAGCTAAATTCCGAAGAAGATGCTCGGGAAACAATGATGAAGTGCTTCTAGAA 296
|||||| |||||||||||| ||||||||||||||| || || ||||||||||||||| ||
Sbjct 137 ATTTCT-CAGCTAAATTCCTAAGAAGATGCTCGGG-AA-AA-GATGAAGTGCTTCTACAA 192
Query 297 GGAATGCCACCGGAGTATTACGATGATGAATGGCAAGCTCGACagagagagaagaccaaa 356
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 193 GGAATGCCACCGGAGTATTACGATGATGAATGGCAAGCTCAACAGAGAGAGAAGACCAAA 252
Query 357 gaactgcggcggatgcagcgggaggaagaagaagaagaggagagaaagattgaagaaTAC 416
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GATCTGCGGCGGATGCAGCGGGAGGAAGAAGAAGAAGAGGAGAGAAAGATTGAAGAATAC 312
Query 417 CGTGAAATTGGCACGAGGTTGAAGGAATTTCCCGAGCAAGACTTAAGGAAAGCCAGAAAG 476
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 313 CGTGAAATTGGCATGAGGTTGAAGGAATTTCCTGAGCAAGACTTAAGGAAAGCCAGAAAG 372
Query 477 CTCGTCTCCAGCTTCATCAGAGCTGCCGAGGAAGTCGAAGAGAGAATTGAAGAAGCAGCC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 CTCGTCTCCAGCTTCATCAGAGCTGCCGAGGAAGTCGAAGAGAGAATTGAAGAAGCAGCC 432
Query 537 GAGAAAGGAGAACTTGACGAGCTTGTCCTCATGATCATATGGAACCGGCTTGACCTTGCT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GAGAAAGGAGAACTTGACGAGCTTGTCCTCATGATCATATGGAACCGGCTTGACCTTGCT 492
Query 597 AGGCGCGATGATGAGAAGGACGCCATCAGAAGTCTTGATCTTTTGTATAGAAGAGTCGAG 656
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 493 CGCCGCGATGATGAGAAGGACGCCATAAGAAGTCTTGATCTTTTGTATAGAAGAGTCGAG 552
Query 657 ACAGAGATCTTAAAACGGCAAGCAAGTCCTGCAATGAAACTGCTGAATGATCTTCTAAAT 716
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 553 ACAGAGATCTTAAAACGGCAAGCAAGTCCTGCAATGAATCTGCTGAATGATCTTCTAAAC 612
Query 717 ATGCATGATGGCTTTGAAGACGATGCTTGGCTCAAGGACTGCAGAAAACGAATGGCTGAG 776
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 613 ATGCATGATGGCTTTGAAGACGATGCTTGGCTCAAGGACTGCAGAAAACGCATGGCGGAG 672
Query 777 ACCTTCCCCCGAGAAGACCCCTTCAGCATTCTAATGCCACCGGGATTCGACATTGATATG 836
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 673 ACCTTCCCCCGAGAAGACCCCTTCAGCATTCTAATGCCTCCGGGATTCGACATTGATATG 732
Query 837 CATCAAGGACAGTTGCGACCGCCCATTGAGACTGAGACAGACAACACCCTTCTGAGAGTA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CATCAAGGACAGTTGCGACCGCCCATTGAGACTGAGACAGACAACACCCTTCTGAGAGTA 792
Query 897 GACTTTGTAAGAGAAGTGGATGCACTGCTACAGGAAGTGAGGATAGAGGAAGACGCT-AC 955
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 793 GACTTTGTAAGAGAAGTGGATGCATTGCTACAGGAAGTGAGGATAGAGGAAGACGCTGA- 851
Query 956 AACTGGTAGCAAAGGAGAAGGGCTTGATCCTGAAGCTATAGCACTTAAGTTTAAGCAACA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 852 AACTGGTAGCAAAGGAGAAGGGCTTGATCCTGAAGCTATAGCACTTAAGTTTAAGCAGCA 911
Query 1016 GGAGAAGCAACGAACCATCCGCCAAATTGAAGCCATTCTTGATTTAGCCCTCAACTTGAA 1075
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 912 GGAGAAGCAACGAACCATCCGCCAAGTTGAAGCCATTCTTGATTTGGCCCTCAACTTGAA 971
Query 1076 GTGGTAGGCAGTTAACTAGAATATCAATCTATACGCCATAATAAtttttttA-AGATAGA 1134
|||||||| || |||| |||| ||||||||||| || |||||| |||||||| |||||||
Sbjct 972 GTGGTAGGGAGGTAACAAGAACATCAATCTATATGCTATAATA-TTTTTTTATAGATAGA 1030
Query 1135 CCCTAGAGTT-AGATTGATTCAGGCGTTTTTGTTTAGAAATGAATGGAGTCTAAATAATA 1193
|| |||| || ||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 1031 CCTTAGATTTTAGATTGATTCAGGCGTTTTTGTTTAGAAATGAATGAA-TC-AAATAATA 1088
Query 1194 GGTTTTGGCTAAAAATTCCAAATCCAAATGTTGCTGACTA-TCTCTCTGCT-CATAGTCT 1251
||||||||| |||||||||||||| |||||||| |||||| ||||| |||| ||||||||
Sbjct 1089 GGTTTTGGCCAAAAATTCCAAATCAAAATGTTGGTGACTAATCTCTTTGCTTCATAGTCT 1148
Query 1252 C-CACCACAATCATCTCTTCCTCTTTC 1277
| | |||||||||||||||||||||||
Sbjct 1149 CTCTCCACAATCATCTCTTCCTCTTTC 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47729892084
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5