BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48130.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322456 jgi|Araly1|322456|fgenesh1_pm.C_scaffold_4002513 859 0.0
Ahg497035 jgi|Araly1|497035|fgenesh2_kg.8__2851__AT2G48130.1 658 0.0
> Ahg322456 jgi|Araly1|322456|fgenesh1_pm.C_scaffold_4002513
Length=552
Score = 859 bits (465), Expect = 0.0
Identities = 525/554 (95%), Gaps = 4/554 (1%)
Strand=Plus/Plus
Query 17 ATGGGGTATAGAAGAAGCTACGCAATCACATTTGTAGCCCTTGTGGCGGCTCTATGGAGC 76
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1 ATGGGGTATAGAAGAAACTACGCAATCACATTTGTAGCCCTTGTGGTGGCTCTATGGGGC 60
Query 77 GTAACAAAAGCACAGCCGAGCAGTTCATGCGTGAGCACACTGACCACTCTCTCTCCGTGC 136
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 61 GTAACAAAAGCACAGCCGAGCGGGTCATGCGTGAGCACACTGACCACTCTCTCTCCGTGC 120
Query 137 CTCAGCTACATCACCGGAAACTCAACCACTCCCTCACAGCCTTGCTGTTCTCGGCTCGAC 196
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 CTCAGCTACATCACCGGAAACTCAACCACTCCCTCACAGCCTTGCTGTTCTCAGCTCGAC 180
Query 197 TCTGTCATCAAATCTTCGCCGCAGTGCATCTGCTCAGCCGTCAACAGTCCGAT-CCCAAA 255
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 181 TCTGTCATCAAATCTTCACCGCAGTGCATCTGCTCAGCCGTAAACAGTCCGATTCCCAA- 239
Query 256 CATCGGCCTTAACATTAACCGCACACAGGCCTTGCAGCTCCCCAATGCCTGCAACATTCA 315
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CATCGGTCTTAACATTAACCGCACACAGGCCTTGCAGCTCCCCAATGCCTGCAACATTCA 299
Query 316 GACGCCTCCCCTCACACAATGCAACGCGGCCACTGGTCCAACAGCACAGCCTCCCGCACC 375
|||||||||||||||||||||||||||||||||||||||| |||||| |||||| || ||
Sbjct 300 GACGCCTCCCCTCACACAATGCAACGCGGCCACTGGTCCAGCAGCACCGCCTCCGGC-CC 358
Query 376 CT-CACCGACGGAAAAGACCCCAGATGTGACACTAACCCCAACCTCATTGCCGGGTGCTC 434
|| ||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 359 CTTCACCGACGGAAAATACCTCAGATGTGACACTAACCCCAACCTCATCGCCGGGTGCTC 418
Query 435 GTTCAGGAGTTGGAGGTGGTTCCAAGACAGTTCCCTCCGTTGGTACCGGCTCGTCCAGCA 494
|||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||
Sbjct 419 GTTCAGGAGTTGGAGGTGGTTCCAAGACCGTTCCCTCTGCTGGTTCCGGCTCGTCCAGCG 478
Query 495 GGAATGTTGACCCCTTGCCGCTGCATTTTCTTATGTTTGCTGTATTGGTGGTCTGCACTT 554
|||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 479 GGAACGTTGACCACGTGCCGCTGCATTTTCTTATGTTTGCTGTATTTTTGGTCTGCACTT 538
Query 555 CTTCTTTTCTTTAA 568
||||||||||||||
Sbjct 539 CTTCTTTTCTTTAA 552
> Ahg497035 jgi|Araly1|497035|fgenesh2_kg.8__2851__AT2G48130.1
Length=504
Score = 658 bits (356), Expect = 0.0
Identities = 466/516 (90%), Gaps = 20/516 (4%)
Strand=Plus/Plus
Query 28 AAGAAGCTACGCAATCACATTTGTAGCCCTTGTGGCGGCTCTATGGAGCGTAACAAAAGC 87
||||| ||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 1 AAGAAACTACGCAATCACATTTGTAGCCCTTGTGGTAGCTCTAGGGGGCGTAACAAAAGC 60
Query 88 ACAGCCGAGCAGTTCATGCGTGAGCACACTGACCACTCTCTCTCCGTGCCTCAGCTACAT 147
||||||||| | |||||| | | |||||||||||||| |||||||||||||
Sbjct 61 ACAGCCGAGTGGGTCATGC----G-----T--CCACTCTCTCTCCGCGCCTCAGCTACAT 109
Query 148 CACCGGAAACTCAACCACTCCCTCACAGCCTTGCTGTTCTCGGCTCGACTCTGTCATCAA 207
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 110 CACCGGAAACTCAACCACTCCCTCACAGCCTTGCTGTTCTCAGCTCGACTCTGTCATCAA 169
Query 208 ATCTTCGCCGCAGTGCATCTGCTCAGCCGTCAACAGTCCGA-TCCCAAACATCGGCCTTA 266
|||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 170 ATCTTCGCCGCAATGCATCTGCTCAGCCGTCAACAGTCCGATTCCC-AACATCGGCCTTA 228
Query 267 ACATTAACCGCACACAGGCCTTGCAGCTCCCCAATG-C-C-T----GCAACATTCAGACG 319
|||||||||||||||||||||||||||||||||||| | | | ||||||||||||||
Sbjct 229 ACATTAACCGCACACAGGCCTTGCAGCTCCCCAATGCCTCATGCCCGCAACATTCAGACG 288
Query 320 CCTCCCCTCACACAATGCAACGCGGCCACTGGTCCAACAGCACAGCCTCCCGCACCCTCA 379
|||||||||||||| |||||||| |||||||||||| |||||| |||||||||||| |||
Sbjct 289 CCTCCCCTCACACAGTGCAACGCCGCCACTGGTCCAGCAGCACCGCCTCCCGCACCTTCA 348
Query 380 CCGACGGAAAAGACCCCAGATGTGACACTAACCCCAACCTCATTGCCGGGTGCTCGTTCA 439
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 349 CCGACGGAAAATACCCCAGATGTGACACTAACCCCAACCTCATCGCCGGGTGCTCGTTCA 408
Query 440 GGAGTTGGAGGTGGTTCCAAGACAGTTCCCTCCGTTGGTACCGGCTCGTCCAGCAGGAAT 499
|||||||||||||||||||||||| ||||||||| |||| |||||| ||||| | ||||
Sbjct 409 GGAGTTGGAGGTGGTTCCAAGACAATTCCCTCCGCTGGTGCCGGCTTGTCCACCGGGAAC 468
Query 500 GTTGACCCCTTGCCGCTGCATTTTCTTATGTTTGCT 535
|| |||| | ||||||||||| |||||||||| |||
Sbjct 469 GTCGACCGCGTGCCGCTGCATCTTCTTATGTTCGCT 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5