BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48140.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484008 jgi|Araly1|484008|fgenesh2_kg.4__3068__AT2G48140.1 998 0.0
> Ahg484008 jgi|Araly1|484008|fgenesh2_kg.4__3068__AT2G48140.1
Length=762
Score = 998 bits (540), Expect = 0.0
Identities = 612/646 (95%), Gaps = 8/646 (1%)
Strand=Plus/Plus
Query 1 ATCGTCACCGGAAGATTAAGCAGGCCAATTAAAATGGAAGGCTTAACATTGATAGTAGTG 60
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTCACCGGAGGATTAAGCAGGCCAATTAAAATGGAAGGCTTAACATTGATAGTAGTG 60
Query 61 ATGATGTCAAGCTTTATGTTGGGAGGGCAAGGTCAGCAGATAAGCACGCCATGCACCTCC 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 61 ATGATGTCAAGCTTTATGTTGGGAGGGAAAGGTCAGCAGATAAGCACGCCATGTACCTCC 120
Query 121 TCCATGATCTCTACCTTCACTCCATGTCTCAACTTCATCACCGGAAGCAGCGGCGGTTCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCATGATCTCTACCTTCACTCCATGTCTCAACTTCATCACCGGAAGCAGCGGCGGTTCC 180
Query 181 GTCACTCCCACCGCCGGCTGCTGCGACTCCTTGAAGACGTTGACCAACACTGGCATGGGC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 181 GTCACTCCCACCGCCGGCTGCTGCGACTCCTTGAAGACGTTGACCAACACCGGAATGGGC 240
Query 241 TGTGCTTGCCTCATCCTCACTGCTAACGTCCCGCTGCCTACTGGCTTCATCAATCGGACT 300
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TGTGCTTGCCTCATCCTCACCGCTAATGTCCCGCTGCCTACTGGCTTCATCAATCGGACT 300
Query 301 CTGGCGCTTGCTCTACCTCGAGCCTGCAAAATGGGCGGTGTACCTATTCAATGTCAAGCT 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CTCGCGCTTGCTCTACCTCGAGCCTGCAAAATGGGCGGTGTACCTATTCAGTGTCAAGCT 360
Query 361 GCGGGGACTCCTCTACCAGCTCCAGGTCAGGTTCCATTTTTGATTGCTCCACCACCTCAG 420
|||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 361 GCGGGGGCTCCTCTACCAGCGCCAGGTCAGGTTCCATTTTTGATTGCTCCCCCACCTCCT 420
Query 421 GTGTCTGCTTTTAGCCCGGGAGCGTCCAAGGCGGCGGGGACAACACCAACACAGGCACCT 480
|| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 GTCTCTGCTTTTAGCCCCGGAGCGTCCAAGGCGGCGGTGACAACACCAACACAGGCACCT 480
Query 481 GCACC-G----G-ATACTCCCGCGGATGGACCAACGGGACCCACAACTAAATCAGGAATT 534
||||| | | |||||||||| |||||||||||||| |||||||||||| | ||||||
Sbjct 481 GCACCTGCACCGGATACTCCCGCAGATGGACCAACGGGTCCCACAACTAAACCCGGAATT 540
Query 535 CGACCCGTAGATCAGCCCATGCAACCCACCGGCCTCGCTCAATCTTCTACTTCTCCATTT 594
|||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 541 CGACCCGTAGATCAGCCCATGCAACCCACCAGCCTCGCTCAGTTTTCTACTTCTCCATTT 600
Query 595 CTCCCGTTGCTTTTCATATCTCTTATCCTGTTGAACTT-ATAAGCC 639
||||||||||| |||||||||||||||||||||| ||| |||||||
Sbjct 601 CTCCCGTTGCTCTTCATATCTCTTATCCTGTTGA-CTTTATAAGCC 645
Score = 122 bits (66), Expect = 3e-27
Identities = 84/92 (91%), Gaps = 4/92 (4%)
Strand=Plus/Plus
Query 676 TGTTGTCAGATATTTTCATTACGAGTTCATTTTTACACATGATTTCAGCaaaaaaaaTAC 735
||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 646 TGTTGTCAGATATTTTCATTACGAGTTCATTGTTACACATGATTTCAACAAAAA---TAC 702
Query 736 TATTTCAATACTCTGATAAATTATTTCAAAAA 767
| | |||| |||||||||||||||||||||||
Sbjct 703 T-TGTCAAGACTCTGATAAATTATTTCAAAAA 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5