BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G48150.1
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484007 jgi|Araly1|484007|fgenesh2_kg.4__3067__AT2G48150.1 1103 0.0
Ahg324733 jgi|Araly1|324733|fgenesh1_pm.C_scaffold_5002277 394 5e-109
> Ahg484007 jgi|Araly1|484007|fgenesh2_kg.4__3067__AT2G48150.1
Length=681
Score = 1103 bits (597), Expect = 0.0
Identities = 644/666 (97%), Gaps = 6/666 (1%)
Strand=Plus/Plus
Query 71 AGAGATGGGTGCTTCTGCTTCGGTTCCCGAGAGATCCGTCCATCAATTCACTGTAAAGGA 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 AGAGATGGGTGCTTCTGCTTCGGTTCCCGAGAGATCCGTCCATCAATTCACTGTAAAGGA 79
Query 131 TAGCTCCGGCAAGGACCTGAATATGAGCATTTACCAAGGGAAAGTCCTCCTCATCGTCAA 190
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 80 TAGCTCCGGCAAGGACCTGAATTTGAGCATTTACCAAGGAAAAGTCCTCCTCATCGTCAA 139
Query 191 TGTTGCTTCCAAATGCGGTTTCACCGAAACAAACTATACACAGCTCACCGAACTTTACCG 250
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 140 TGTTGCTTCCAAATGCGGTTTCACCGAAACAAACTATACCCAGCTCACCGAACTTTACCG 199
Query 251 GAAATACAAGGACCAAGATTTTGAGATCTTGGCATTCCCTTGCAACCAGTTTCTATACCA 310
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 GAAATTCAAGGACCAAGATTTTGAGATCTTGGCATTCCCTTGCAACCAGTTTCTATACCA 259
Query 311 GGAGCCCGGCACAAGTCAAGAGGCTCATGAATTTGCCTGCGA-ACGCTTTAAGGCCGAAT 369
||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 260 GGAGCCCGGCACAAGTCAAGATGCTCATGAATTTGCCTGC-ACACGCTTTAAGGCCGAAT 318
Query 370 ACCCTGTTTTCCAAAAGGTACGCGTAAACGGTCAAAACGCAGCACCAATCTATAAATTCC 429
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 319 ACCCTGTTTTCCAAAAGGTACGCGTAAACGGTCAAAACGCAGCACCACTCTATAAATTCC 378
Query 430 TTAAGGCAAGTAAACCCACCTTTCTGGGTTCCAGAATTAAGTGGAACTTCACCAAGTTCT 489
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 379 TGAAGGCAAGTAAACCCACCTTTCTGGGTTCCAGGATAAAGTGGAACTTCACCAAGTTCT 438
Query 490 TGGTCGGCAAAGATGGCTTAGTGATTGATCGTTATGGCACGATGGTTACACCGCTATCAA 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TGGTCGGCAAAGATGGCTTAGTGATTGATCGTTATGGCACGATGGTTACACCGCTATCAA 498
Query 550 TCGAGAAAGACATCAAGAAAGCTCTTGAAGACGCTTGAAAACAACAGACGAGATTGCC-A 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 499 TCGAGAAAGACATCAAGAAAGCTCTTGAAGACGCTTGAAAACAACAGACGAGATTGCCGA 558
Query 609 ATTAACAATCACGGTTAATTTTGTAATGTAAATTGCAGCTTTTATGTCGAAATTTCTTTT 668
|| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 AT-AACA-TCACAGTTAATTTTGTAATGTAAATTGCAGCTTTTATGTCGAAATTTCTTTT 616
Query 669 TGGACATGTTTCTCTGTTTAGTGTATaaaaaaaGAATTCCTTTTGGAAGAGTAGGTTGCT 728
|| ||| ||||||||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 617 TG-ACAAGTTTCTCTGTTTAGTGTATTCGAAAAGAAGTCCTTTTGGGAGAGTAGGTTGCT 675
Query 729 GTTTTC 734
||||||
Sbjct 676 GTTTTC 681
> Ahg324733 jgi|Araly1|324733|fgenesh1_pm.C_scaffold_5002277
Length=522
Score = 394 bits (213), Expect = 5e-109
Identities = 398/487 (82%), Gaps = 14/487 (3%)
Strand=Plus/Plus
Query 97 CCGAGAGATCCGTCCATCAATTCACTGTAAAGGATAGCTCCGGCAAGGA-CCTGAATATG 155
|||||| ||| ||||||||||||| || |||||||||||||||||||| || | |
Sbjct 29 CCGAGAAATCAATCCATCAATTCACCGTCAAGGATAGCTCCGGCAAGGAGGTTG-ACCTA 87
Query 156 AGCATTTACCAAGGGAAAGTCCTCCTCATCGTCAATGTTGCTTCCAAATGCGGTTTCACC 215
||| | || ||||||||||| | ||| |||||||||| ||||| |||||||| |||||
Sbjct 88 AGCGTATATCAAGGGAAAGTGTTGCTCGTCGTCAATGTCGCTTCTAAATGCGGATTCACG 147
Query 216 GAAACAAACTATACACAGCTCACCGAACTTTACCGGAAATACAAGGACCAAGATTTTGAG 275
||| | || ||||| ||||| || ||||||||||||||||| || || |||| |||| |
Sbjct 148 GAATCCAATTATACCCAGCTGACGGAACTTTACCGGAAATATAAAGATCAAGGGTTTGTG 207
Query 276 ATCTTGGCATTCCCTTGCAACCAGTTTCTATACCAGGAGCCCGGCACAAGTCAAGAGGCT 335
|| ||||| || ||||||||||||||||| ||||| ||||| ||||| || ||||| |||
Sbjct 208 ATATTGGCCTTTCCTTGCAACCAGTTTCTGTACCAAGAGCCTGGCACCAGCCAAGATGCT 267
Query 336 CATGAATTTGCCTGCGA-ACGCTTTAAGGCCGAATACCCTGTTTTCCAAAAGGTACGCGT 394
||| |||||||||| | || ||||||||||||||||| |||||||||||||| || ||
Sbjct 268 CATCAATTTGCCTG-TACTCGGTTTAAGGCCGAATACCCCGTTTTCCAAAAGGTGCGTGT 326
Query 395 AAACGGTCAAAACGCAGCACCAATCTATAAATTCCTTAAGGC-AAGTAAACCCACCTTTC 453
|| || |||||||| |||||| |||| |||||||| || | ||| |||||| | ||||
Sbjct 327 CAATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCTAAG-AAACCCTCTTTTC 385
Query 454 -TGG--GTTCCAGAATTAAGTGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGGCTTAG 510
||| | | | | || || |||||||||||||||||||||||||||||||||||| ||
Sbjct 386 TTGGAAG-T-C-GTATCAAATGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGGCCAAG 442
Query 511 TGATTGATCGTTATGGCACGA-TGGTTACACCGCTATCAATCGAGAAAGACATCAAGAAA 569
| ||||||||||||||||| | || | | || ||||| ||| ||||||||||| |||||
Sbjct 443 TCATTGATCGTTATGGCACAACTG-TGCCTCCTCTATCCATCCAGAAAGACATCGAGAAA 501
Query 570 GCTCTTG 576
|| ||||
Sbjct 502 GCCCTTG 508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27029148153
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5