BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01015.1
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477435 jgi|Araly1|477435|fgenesh2_kg.3__136__AT3G01015.1 2401 0.0
Ahg941037 jgi|Araly1|941037|scaffold_601581.1 558 4e-158
> Ahg477435 jgi|Araly1|477435|fgenesh2_kg.3__136__AT3G01015.1
Length=1703
Score = 2401 bits (1300), Expect = 0.0
Identities = 1617/1759 (92%), Gaps = 66/1759 (4%)
Strand=Plus/Plus
Query 3 TACATACAAAGTCGAGAGCTTCCTCACAAGTCGCAACGGTCAGACAAttccctcctctcc 62
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TACATACATAGTCGAGAGCTTCCTCACAAGTCGCAACGGTCAGACAATTCCCTCCTCTGC 60
Query 63 ctctctcttcttcttcttcccttcACTCACTCGAAAAGACAAAACCCTAATTTCTCACAT 122
|||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||
Sbjct 61 CTCTCTCTTCTTCTTCTT--CTTC-CTC-TTCGAGAAGACAAAACCCTAATTTCTCACA- 115
Query 123 TTTTCTGCTCTCATCTTTCGATGGAGTCGACGAATTTGAAGAATGCTAAACACGAGACTC 182
| | | ||| | | | | ||| | || ||||||||||||||||||||
Sbjct 116 --------T-T-A---TTC--T--A-T-G--GAA-TCGACGAATGCTAAACACGAGACTC 153
Query 183 TGGTGATGGATCCGATCAGTTTTCAATCCAAGGCTCAAGAGGTTTC-ACGATTCTCCGAG 241
|||||||||| |||||||||||||||||||||| ||||||| |||| | ||||||||||
Sbjct 154 TGGTGATGGAACCGATCAGTTTTCAATCCAAGGATCAAGAGATTTCGA-AATTCTCCGAG 212
Query 242 AATTCTAACCCTAACTTCGTCTCACACTCGACTCCACTCGAGAAATCGAGTAAATCTTCT 301
||||||||||||||| ||||||||||||||||||||||| | | ||||| |||
Sbjct 213 AATTCTAACCCTAACGTCGTCTCACACTCGACTCCACTC--G----C---CAAATCGTCT 263
Query 302 GCGCAGAAGAATCCGAAATGGAAGCCTAATCCTGTTCCGGCGGTTTTCTCACCACGGAAT 361
||||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 264 GCGCAGAAGAATCCGAAAT------CGAA----G--CCGGCGGTTTTCTCACCACGGAAT 311
Query 362 CGGATCAGAGAGAGGAGGTTCGTGGTGGTGAAGAAGAATTCAAGGAAGGAGAAGAATGAT 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 312 CGGATCAGAGAGAGGAGGTTCGTGGTGGTGAAGAAGAATTCAAGGAAGGAGAAGAAGGAT 371
Query 422 TCCGCGTCTGTGGATTGCAAATGTGGAGCTAAGACCATTTCCAATATGAAGAAATGTGTC 481
|| | |||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 372 TCAGGGTCTGTGGATTGCAAATGTGGAGCTAAGACCAATTCCAACATGAAGAAATGTGTT 431
Query 482 TGTATAGCATACGAAACTCTACGGGCGTCACAGGAAGAGTTCTTCAACAATCGAAGAGAA 541
|| || || || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 432 TGCATTGCGTATGAAACTCTACGGGCTTCACAGGAAGAGTTCTTCAACAATCGAAGAGAA 491
Query 542 TCCGTATCAGAAATTGGAGAATCCAGCCAGAATTTGGAGGATGGAAATGAACAAGTCGAA 601
|| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 492 TCTGAATCAGAAATTGGAGAATCCAGCCAGAATTTGGAGGATGGAGATGAACAAGTCGAA 551
Query 602 TTTGGAGATTCTGATGAAACTAGGGTTTCTTTGATGAAGAGGAGAAGAGAAAAAGTATTG 661
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 552 ATTGGAGATTCTGATGAAATTAGGGTTTCTTCGATGAAGAGGAGAAGAGAAAAGGTATTG 611
Query 662 GAAGAAGCGAGAATGAGTATACCTGAATTTGGTAAAGTGATGCATCTAGTTAAAGCTTTT 721
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 612 GAAGAAGCGAGAATGAGTCTACCTGAATTTGGTAAAGTGATGCATCTTGTTAAAGCTTTT 671
Query 722 GAGAAGCTTACTTGCTTCCCACTTTCGAAGGTAACTTCT-A--AGGAAGAAGAAGATCAG 778
|||||||||||||||||||||||||| |||||||| | | | |||||||||||||||||
Sbjct 672 GAGAAGCTTACTTGCTTCCCACTTTCAAAGGTAACATATAAGGAGGAAGAAGAAGATCAG 731
Query 779 ATTAAGCAACCTTTGAAATGGGAATTGCCTGGAATGAG-C--CAGCCTAAGTGTTCAGAA 835
|||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct 732 ATTAAGAAACCTTTGAAATGGGAATTGCCTGGAATGAGCCAGCAGCCTAAGTGTCCAGAA 791
Query 836 TCTGAGACAGATCAATTCACTTGGAGTTCTTCATTCTATCCAT-CATCTGGTTTGATCTT 894
||||||| |||||| |||||||||| ||||| || | | | | |||||| |||| ||||
Sbjct 792 ACTGAGACTGATCAAGTCACTTGGAGCTCTTCGTT-T-T-C-TCCATCTGATTTGGTCTT 847
Query 895 AACAGCTACGAATCTAGGACTAGAACAACCTCATGCCTCAGTTTCTTCATCATGGGACAA 954
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GACTGCTACAAATCTGGGACTAGAACAACCTCATGCCTCAGTTTCTTCATCATGGGACAA 907
Query 955 TAGTGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATAGCTTCGAATC 1014
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 908 TAGTGTTTCAAGTCTGAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATAGCTTGGATTC 967
Query 1015 CTCTGCTTCAATGGGAAGTAGAAGATC-AACGAAGAAGCAGATCAAAGTCACTTCTCTGA 1073
||||||||| |||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 968 CTCTGCTTCGATGGGATGTAGAAGATCGAA-GAAGAAGCAGATCAAAGTCACTTCTCTGA 1026
Query 1074 AGCCATTTAAACTCAGAACTGAGGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGA 1133
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1027 AGCCATTTAAACTCAGAACTGAGGAACGGGGAAGAATGAAAGAAGAAGAGTTTGCAAAAA 1086
Query 1134 AGCTACACGAGATGACGTTGGAGAAAGCAAAAAA-GAGAATCCCCATAGCTCAAGGTCTT 1192
||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct 1087 AGCTACACGAGATGACGCAGGAGAAAG-AAAAAATGAGAATCCCCATAGCTCAAGGTCTT 1145
Query 1193 CCCTGGACAACTGATGAACCTGAGAATCTGGTTAAGCCTCATGTGAAAGATATCACGATA 1252
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1146 CCCTGGACAACTGATGAACCTGAGAATTTGGTTAAGCCTCATGTGAAAGATATCACAATA 1205
Query 1253 CCAGTAGACTTAAAGCTCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTAC 1312
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1206 CCAGTAGACTTGAAGCTCCATTCAGACATTCGAGCAGTAGAACGTGCAGAATTTGATTAC 1265
Query 1313 CAGGTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAA 1372
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1266 CAGGTTGCTGAGAAAATAAACCTAATCGAGCAATACAAAACAGAAAGAGAACGCCAACAA 1325
Query 1373 AAGCTAGCAGAAGAAGAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAGGCACAA 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 AAGCTAGCAGAAGAAGAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAGGCACAA 1385
Query 1433 CCAATGCCATACTTTGATCGACCATTCATTCCCAAAAGGTCGAACAAGCACCCGACGGTA 1492
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1386 CCAATGCCTTACTTTGATCGACCATTCATTCCCAAAAGGTCGAACAAGCACCCGACGATA 1445
Query 1493 CCTCGAGATCCCAAGTTTAATATACCGCAACACAAGAAGATAAGATGCTGCAGTACATCG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 CCTCGAGATCCCAAGTTTAATATACCGCAACACAAGAAGATAAGATGCTGCAGTACATCG 1505
Query 1553 TCTTGGAGTGACACTGGATCTTACATGAGCGACCTCTTATACCAACAAGACCTCTAAACA 1612
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1506 TCTTGGAGTGACACTGGATCTTACATGAGCGACCTCTTGTACCAACAAGACCTCTAAAAA 1565
Query 1613 AGCTTTGCATTCAATAATCTTGTTCCTTGTCCATATCATCTCTTTATAAACAACATCTTA 1672
| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1566 ACCTTTGAATTCAATAATCTTGTTCCTTGTCCATATCATCTCTTCATAAACAACATCTTA 1625
Query 1673 CATTTTCTTTGAAGCAACCAATTAGTTGGAACTTGCAAGATTTGGGTTTCCTCGTACTTG 1732
| ||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct 1626 CCTTTTCCTTGAAGCAACCAATTAGTTGCAACTTACAAGATTTGG-TTTCCTCGTACTTG 1684
Query 1733 TTCCATCTTTGTAATCATG 1751
|||||||||||||||||||
Sbjct 1685 TTCCATCTTTGTAATCATG 1703
> Ahg941037 jgi|Araly1|941037|scaffold_601581.1
Length=1345
Score = 558 bits (302), Expect = 4e-158
Identities = 516/619 (83%), Gaps = 16/619 (3%)
Strand=Plus/Plus
Query 974 TCAAATGGTGGCCGGAGGGGCAGAAGAAATAGCTTCGAATCCTCTG-CTTCAATGGGAAG 1032
||||||| |||| |||| |||||||||||||| | || || || | || ||||||||||
Sbjct 693 TCAAATGCTGGCAGGAGAAGCAGAAGAAATAGCATGGACTCATC-GACTACAATGGGAAG 751
Query 1033 TAGAAGATCAACGAAGAAGCAGATCAAAGTCACTTC-TCTGAAGCCATTTAAACTCAGAA 1091
||||||||||| |||||||||| | || |||||||| | ||||||| ||||| || ||||
Sbjct 752 TAGAAGATCAAAGAAGAAGCAGGTTAAGGTCACTTCAT-TGAAGCCGTTTAAGCTTAGAA 810
Query 1092 CTGAGGAACG-GGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGACG 1150
||||| || | || | ||||||||| |||||||||||||| ||| | || || || |||
Sbjct 811 CTGAGCAAAGAGGTA-AAATGAAAGAGGAAGAGTTTGCAAAAAAGATTCATGAAATAACG 869
Query 1151 TTGGAGAAAGCAAAA-AAGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGA 1209
|||||| ||| |||| | |||||||||||| |||||||||||||| |||||||| |||||
Sbjct 870 TTGGAGGAAG-AAAAGATGAGAATCCCCATTGCTCAAGGTCTTCCGTGGACAACCGATGA 928
Query 1210 ACCTGAGAATCTGGTTAAGCCTCA-TGTGAAAGATATCACGATACCAGTAGACTTAAAGC 1268
||||||| ||| ||||||||||| || ||||||||| || | |||||| ||||| | ||
Sbjct 929 ACCTGAGTGTCTAGTTAAGCCTCATTG-GAAAGATATAACTAGACCAGTCGACTTGACGC 987
Query 1269 TCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTACCAGGTTACTGAGAAAA 1328
| || || || | || ||||| ||||| ||||||||||||||||||||| | ||||| |
Sbjct 988 TTCACTCAGATGTCCGGGCAGTTGAACGCGCAGAATTTGATTACCAGGTTGCCGAGAAGA 1047
Query 1329 TAAACCT-AGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAAAAGCTAGCAGAAGAA 1387
| | | | | | ||||||||||||| ||||||||| | ||||| ||| | ||||| |||
Sbjct 1048 TGAGCTTCA-TTGAGCAATACAAAATGGAAAGAGAAAGACAACAGAAGTTGGCAGAGGAA 1106
Query 1388 GAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAGGCACAACCAATGCCATACTTT 1447
||||||||| ||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1107 GAAGAGATAAAAAGGCTGAGGAAAGAATTGGTCCCCAAAGCACAACCAATGCCATACTTT 1166
Query 1448 GATCGACCATTCATTCCCAA-AAGGTCGAACAAGCACCCGACGGTACCTCGAGATCCCAA 1506
||||||||||||||||| || |||||||| ||| || || || | ||| | |||||||||
Sbjct 1167 GATCGACCATTCATTCC-AAGAAGGTCGAGCAAACATCCAACTGCACCACAAGATCCCAA 1225
Query 1507 GTTTAATATACCGCAACACAAGAAGATAAGATGCTGCAGTACATCGTCTTGGAGTGACA- 1565
||| | |||||||||||||||||||| |||||||||||| |||| ||||||||||| |
Sbjct 1226 GTTCCACATACCGCAACACAAGAAGATCAGATGCTGCAGTTCATCTTCTTGGAGTGA-AG 1284
Query 1566 CTGGATCTTACATGAGCGA 1584
|||| || | |||||||||
Sbjct 1285 CTGGCTCCTGCATGAGCGA 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65819943360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5