BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01020.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477433 jgi|Araly1|477433|fgenesh2_kg.3__134__AT3G01020.1 843 0.0
Ahg945138 jgi|Araly1|945138|scaffold_701367.1 150 1e-35
Ahg343509 jgi|Araly1|343509|fgenesh1_pg.C_scaffold_3003272 134 1e-30
> Ahg477433 jgi|Araly1|477433|fgenesh2_kg.3__134__AT3G01020.1
Length=571
Score = 843 bits (456), Expect = 0.0
Identities = 537/575 (93%), Gaps = 10/575 (2%)
Strand=Plus/Plus
Query 1 ACTGCCCTTGATTCCGGCAAA-GAGAAAGAGAGAATATGATGATGCTAAGGCAAACGTCG 59
||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 1 ACTGCCCTTGATTCCGGCAAAGGAGAAGGAGAGATTATGATGATGCTAAGGCAAACGTCG 60
Query 60 AGAAAGGCTTACCTAGGGTTACAG-GCGTCTCCTCTAGGGTTAGGTCGTCGATTATACCA 118
|||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 61 AGAAAGGCTTACCTAGGGTTAC-GAGCGTCTCCTCTAGGGTTAGGGCGTCGATTATACCA 119
Query 119 CGAGAATGTAATCGACCACTTTGAAAACCCTAGAAACGTTGGCTCCTTCAACAGGAATGA 178
||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 CGAGAGTGTGATCGACCACTTTGAAAACCCTAGAAACGTTGGATCCTTCAACAGGAATGA 179
Query 179 CCCTAACGTTGGCACGGGATTGGTAGGAGCTCCTGCCTGCGGAGACCTCATGAGCCTCCA 238
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 CCCTAACGTTGGCACTGGATTGGTAGGAGCTCCTTCCTGCGGAGACCTCATGAGCCTCCA 239
Query 239 GATTAAGGTCGATGATTCAGGTCAGATCATTGATACTCGATTCAAGACCTTTGGCTGTGG 298
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 240 GATTAAGGTCGATGATTCAGGTCAAATCATTGACACTCGATTCAAGACCTTTGGCTGTGG 299
Query 299 CTCCGCTATCGCCTCATCTTCCGTTGCTTCTGAATGGATCAAGGGCAAAACCTTAGACGA 358
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 300 CTCTGCTATCGCCTCCTCTTCCGTCGCTTCTGAATGGATCAAGGGCAAAACCTTAGAGGA 359
Query 359 AGTTATGACCATCAAGAACGCGGAAATCGCTAAGCATCTTAGGTTGCCACCGGTAAAGCT 418
|||| ||||||||||||| ||||||||||| |||||| | || |||||||| || |||||
Sbjct 360 AGTTTTGACCATCAAGAATGCGGAAATCGCAAAGCATATAAGTTTGCCACCCGTTAAGCT 419
Query 419 ACATTGCAGTATGCTTGCAGAGGACGCTATCAAGTCCGCGGTCAGAGACTACAAGGAGAA 478
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 ACATTGCAGTATGCTTGCAGAGGACGCTATCAAGTCTGCGGTCAGAGACTACAAGGAGAA 479
Query 479 GCAAGCAAAGACTAATGCTGCTGCTGCAGAAGAAACCGTCAAGGCCTGATGATTCCACT- 537
|||||||||| |||||||||||||||||| ||||| |||||||||||||| | |||||
Sbjct 480 GCAAGCAAAGGCTAATGCTGCTGCTGCAGGAGAAATCGTCAAGGCCTGAT--T-CCACTA 536
Query 538 -TATA--CCGCATTGTGCTGCTGCTGATGATGAAT 569
|||| ||| |||||||| |||||||||||||||
Sbjct 537 ATATATGCCGTATTGTGCTTCTGCTGATGATGAAT 571
> Ahg945138 jgi|Araly1|945138|scaffold_701367.1
Length=493
Score = 150 bits (81), Expect = 1e-35
Identities = 99/108 (92%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 390 AAGCATCTTAGGTTGCCACCGGTAAAGCTACATTGCAGTATGCTTGCAGAGGACGCTATC 449
||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 375 AAGGATCTAAGGTTGCCACCCGTTAAGCTACATTGCAGTATGCTTGCAGAGGACGCTATC 434
Query 450 AAGTCCGCGGTCAGAGACTACAAGGAGAAGCAAGCAAAGACTAATGCT 497
| ||| ||||||||||||||||| |||||||||||| || ||||||||
Sbjct 435 ATGTCTGCGGTCAGAGACTACAAAGAGAAGCAAGCATAGGCTAATGCT 482
> Ahg343509 jgi|Araly1|343509|fgenesh1_pg.C_scaffold_3003272
Length=522
Score = 134 bits (72), Expect = 1e-30
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 420 CATTGCAGTATGCTTGCAGAGGACGCTATCAAGTCCGCGGTCAGAGACTACAAGGAGAAG 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 436 CATTGCAGTATGCTTGCAGAGGACGCTATCAAGTCTGCGGTCAGAGACTACAAGGAGAAG 495
Query 480 CAAGCAAAGACTAATGCT 497
||||||||| ||||||||
Sbjct 496 CAAGCAAAGGCTAATGCT 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25084879386
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5