BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01030.1
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477432 jgi|Araly1|477432|fgenesh2_kg.3__133__AT3G01030.1 1406 0.0
> Ahg477432 jgi|Araly1|477432|fgenesh2_kg.3__133__AT3G01030.1
Length=1067
Score = 1406 bits (761), Expect = 0.0
Identities = 922/999 (92%), Gaps = 13/999 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAACAACAAGAATTTGAGAAACCCATCTTCGAATTCCGTCCTAAGAAGCTCAGA 60
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGAAGAACATCAAGAATTTGAGAAACCCATCTTCGAATTCCACCCTAAGAAGCTCAGA 60
Query 61 ACCTCTCGAGTTTCGAGAAATCTCATGAAGAAGACTGGCTTCAGAGAATCTATGAATCAT 120
| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 61 AACTCTCGAGTTTCGAGAAATCTCACGAAGAAGACTGGTTTCAGAGAATCTATGAATCAT 120
Query 121 TACGAAGAGCTCTCTTGCAACTACGGATTGAGGGAAAACCCGAAGAAAACCCAGAAATCT 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACAAAGAGCTCTCTTGCAACTACGGATTGAGGGAAAACCCGAAGAAAACCCAGAAATCT 180
Query 181 TTACTCGATCATCGATTCTGTACGAGGAGGAGGAGAAATAAAAAGATCCTGATTCGATGC 240
||||||||||||||||| |||||||||||||||| | ||| |||| | |||||||||||
Sbjct 181 TTACTCGATCATCGATTGTGTACGAGGAGGAGGA-A--TAAGAAGAGCTTGATTCGATGC 237
Query 241 AAAGAATGCGGGAAAGGGTTTCTTTACGAGAAATGTCTGTTTAATCATCTCCAAGTGACG 300
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 238 AAAGAATGCGGGAAAGGGTTTCTTTACGAGAAATGTCTGTTGAATCATCGCCAAGTGACG 297
Query 301 CATTCTGAAGAATCTACAAGAA-GAAGCCTGTTTTGTAGGTTTAGTATTGTGCAGAGGAG 359
|||||||||||||||| |||| || | || |||||||| || ||| |||||||||||||
Sbjct 298 CATTCTGAAGAATCTATGAGAAAGA-GTCTATTTTGTAGCTTCAGTGTTGTGCAGAGGAG 356
Query 360 AAAAAGATCGAAGAGAGTTTCCAGGTACAAGAAGATTCTTCCTCGATTCTCTGTTTCTTC 419
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 357 AAAGAGATCGAAGAGAGTTTCCAGGTACAAGAAGATTCTTTCTCGATTCTCTGTTTCTTC 416
Query 420 TTCTTCGTGTACTATGTTTCCTGTTTCTGTGGATGATGGAGGATTATTAGAAGTCGCTGA 479
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 TTCTTCGTGTACAATGTTTCCTGTTTCTGTTGATGATGGAGGATTATTAGAAGTCGCTGA 476
Query 480 GTCTCTGATTCTCTTGTCCATGAGTGGTGGAAAGTTCGTGAATGGTTTGGAACATTT-TG 538
|||||||||||| ||||| |||||||||||||||||| |||||| |||||||| || ||
Sbjct 477 GTCTCTGATTCTGTTGTCTATGAGTGGTGGAAAGTTCTTGAATGCTTTGGAAC-TTAGTG 535
Query 539 GTAAAGCTCTGGGTTCGACTCAGAGAAAATTTGAAGACGGGTTATTGAGAAATGAGCAGA 598
||| |||||||| ||||| || |||| |||||||| | | | ||||||||||||||| ||
Sbjct 536 GTAGAGCTCTGGATTCGAATCCGAGAGAATTTGAACATGTGCTATTGAGAAATGAGCTGA 595
Query 599 GAC-TTGTTGGTGAAGCTCTGGATTCGAATCCAGAGGTGAATTTGAGAAAAGATGGAGAC 657
|| || ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 596 AACATT-TTGGTGAAGCTCTGGATTCGAATTCAGTGGTGAATTTGAGAAAAGATGGAGAC 654
Query 658 TTTGAATATGGGCTTTTGAGTAATGAGCAGAAGAAACTTGTGGGGATAAGCAGAGCATCT 717
|||||| ||||| |||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 655 TTTGAAGATGGGTTTTTGAGTAATGAGCAGAAGAAACCTGTGGGGATTAGTAGAGCATCT 714
Query 718 GTTGGAACATCGAAAGAGCTTTCGGGTTACTTGGCAAACAAGAAGGGCAGAGAAGATGAT 777
|||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||
Sbjct 715 GTTGGAACGTCGAAAGAGCTTTCGGGTTACTTGGCAGACAAGAAGGCCAGAGAAGAAGAC 774
Query 778 GAAT-TGGGTCAGCAGAAACAGGCTGGA-GCAAGAATACTTAGAGAAGAAACTGATAACG 835
|||| ||| ||||||||||| || | || ||| |||| |||||||||||||| |||||||
Sbjct 775 GAATCTGG-TCAGCAGAAACTGG-TAGAAGCAGGAATTCTTAGAGAAGAAACCGATAACG 832
Query 836 AACAGAAACTTGTTCGTCAAGAAACTGCATTTGAAGATTCAGTATCAGGATTTGAGATGA 895
|||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 833 AACACAAACTTGTTTGTCAAGAAACTGCATTTGAAGATTCAATATCAGGATTTGAGATGA 892
Query 896 ATATAGAGCATCGGTGTGGGCTCTGTCACAAGGTTTTCTCGACTTATCAAACTCTTGGTG 955
|||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 893 ATATTGAGCATCGGTGTGGGCTCTGTGACAAGGTTTTCTCGACTTATCAAGCTCTTGGTG 952
Query 956 GTCATCAGACGTTCCATAGAATGAGAAACAAATCCAAAA 994
||||||||||||||||||||||||||||||| |||||||
Sbjct 953 GTCATCAGACGTTCCATAGAATGAGAAACAAGTCCAAAA 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41592102447
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5