BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01040.1
Length=2502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477431 jgi|Araly1|477431|fgenesh2_kg.3__132__AT3G01040.1 3738 0.0
Ahg326001 jgi|Araly1|326001|fgenesh1_pm.C_scaffold_6001221 1807 0.0
> Ahg477431 jgi|Araly1|477431|fgenesh2_kg.3__132__AT3G01040.1
Length=2453
Score = 3738 bits (2024), Expect = 0.0
Identities = 2335/2474 (94%), Gaps = 66/2474 (3%)
Strand=Plus/Plus
Query 23 ttcttcttctcctctcatcttttttgtct-tcttcttcttctttgacaagctcattgctt 81
||||||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 25 TTCTTCTTCTCCTCTCATCTTTTTT-TTTGTCTGCTTCTTCTTTGACAAGCTCATTGCTT 83
Query 82 tgtctttgATCCTGCTTGTATCACGAATTCGGAGGACA-ACCCATTTCGATTCTCGTATC 140
||||||||||||||| |||| ||||||||||||||| | |||| ||||||||||||||||
Sbjct 84 TGTCTTTGATCCTGCCTGTAACACGAATTCGGAGGA-ATACCCGTTTCGATTCTCGTATC 142
Query 141 GAATTTC-T---TGAA--T-CAAAGAGACGGCGGGAATCTCAAATTCAGAATTTTGCTGG 193
||||| | | | || | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 143 GAATTGCTTAAATCAATCTACAAAGAGACGGCGGGAATCTCAAATTCGGAATTTTGCTGG 202
Query 194 GTTGTCGTAAATCCAAATGCGGTCTGAGAGA--A-GACTACAAATTATAAGAAGAGCGAA 250
|||| ||||||||||||||||||||||||| | || |||||| ||||||||| ||||
Sbjct 203 -TTGTTGTAAATCCAAATGCGGTCTGAGAGAGGAAGATTACAAAGAATAAGAAGATCGAA 261
Query 251 TCGGAGTCTAACATCATCGGATTTGGGAGCTACGACTAGATCGAGAATCGAAAAGCAATC 310
|| |||||||||||||||||||||||||||||| | | ||||| ||| | |
Sbjct 262 TCAGAGTCTAACATCATCGGATTTGGGAGCTAC-A-T----CGAGA-TCG----G-A--- 306
Query 311 ATCGAGATCGGAGAAGAAGAGGAATCGCGTAGGGAGGTGATGTTGTTTGGTTGGGGATTG 370
|| | | | | || | | ||||||||||||||||||||||||||||||||||||||
Sbjct 307 ---GA-A--G-A-A-GA-G-G-AATCGCGTAGGGAGGTGATGTTGTTTGGTTGGGGATTG 354
Query 371 GGTGGAATTAGGGTTTTATTGGATTCGATTGATCTGAATACAACAGCGGGGCTGCACGAA 430
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 355 GGTGGAATTAGGGTTTTATTCGATTCGATTGATCTGAATACAACAGTGGGGCTGCACGAA 414
Query 431 CAAGGATGCAGCTTCACATATCGCCTAGCATGAGAAGCATTACGATATCGAGCAGCAATG 490
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 415 CAAGGATGCAGCTTCACATATCGCCGAGCATGAGAAGCATTACGATATCGAGCAGCAATG 474
Query 491 AGTTTATTGATTTGATGAAGATCAAAGTCGCAGCTCGTCACATCTCTTACCGAACTCTCT 550
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 475 AGTTTATCGATTTGATGAAGATCAAAGTCGCAGCTCGTCACATTTCTTACCGAACTCTCT 534
Query 551 TCCACACTATCTTAATCCTCGCTTTCTTGTTACCTTTTGTTTTCATCCTAACCGCTGTTG 610
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 535 TCCACACTATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTCTTCATCCTAACCGCTGTTG 594
Query 611 TTACCCTTGAAGGTGTCAACAAGTGCTCCTCTTTTGATTGTTTCGGGAGGCGGCTAGGAC 670
||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 595 TTACCCTTGAAGGTGTCAACAAGTGCTCCTCCTTTGATTGTTTTGGGAGGCGGTTAGGAC 654
Query 671 CACGTCTTCTTGGTAGGATAGATGATTCAGAGCAGAGACTAGTTAGAGATTTTTACAAAA 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CACGTCTTCTTGGTAGGATAGATGATTCAGAGCAGAGACTAGTTAGAGATTTTTACAAAA 714
Query 731 TTCTAAATGAAGTAAGCACTCAAGAAATTCCAGATGGTTTAAAGCTTCCAGAGTCTTTTA 790
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 715 TTCTAAATGAAGTAAGCACTCAAGAAATTCCAGATGGTTTAAAGCTTCCAGATTCTTTTA 774
Query 791 GTCAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTAT 850
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 775 GTCAACTTGTTTCGGATATGAAGAACAACCACTATGATGCGAAAACATTTGCCCTCGTAC 834
Query 851 TTCGAGCTATGGTAGAGAAGTTTGAAAGGGATTTAAGGGAATCCAAATTTGCAGAACTCA 910
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 835 TTCGAGCTATGGTAGAGAAGTTTGAAAGGGAATTAAGGGAATCCAAATTTGCAGAACTCA 894
Query 911 TGAACAAGCACTTTGCTGCAAGTTCAATTCCAAAAGGAATTCACTGTCTCTCTTTAAGAC 970
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TGAACAAACACTTTGCTGCAAGTTCAATTCCAAAAGGAATTCACTGTCTCTCTTTAAGAC 954
Query 971 TAACCGATGAATATTCCTCCAATGCTCATGCCCGGAGACAGCTTCCTTCCCCGGAGCTTC 1030
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TAACTGATGAATATTCCTCCAATGCTCATGCCCGGAGACAGCTTCCTTCCCCGGAGCTTC 1014
Query 1031 TCCCTGTTCTCTCAGACAATGCTTACCACCATTTTGTTCTAGCTACAGATAATATCTTAG 1090
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 1015 TCCCTGTTCTCTCAGACAATGCTTACCATCATTTTGTTCTAGCTACAGACAATATCTTGG 1074
Query 1091 CTGCATCGGTTGTGGTCTCATCTGCTGTTCAATCATCTTCAAAACCCGAGAAAATTGTCT 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTGCATCGGTTGTGGTCTCATCTGCTGTTCAATCATCTTCAAAACCCGAGAAAATTGTCT 1134
Query 1151 TCCATGTTATCACAGACAAGAAAACCTATGCGGGTATGCATTCTTGGTTTGCACTCAATT 1210
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1135 TTCATGTTATCACAGACAAGAAAACCTATGCGGGTATGCATTCTTGGTTTGCGCTCAATT 1194
Query 1211 CTGTTGCTCCTGCGATTGTTGAAGTGAAAAGCGTTCATCAGTTTGATTGGTTAACAAGAG 1270
|||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1195 CTGTCGCTCCTGCGATTGTTGAAGTCAAAAGTGTTCATCAGTTTGACTGGTTAACAAGAG 1254
Query 1271 AGAATGTTCCAGTTCTTGAAGCTGTGGAAAGCCATAACAGTATCAGAAATTATTACCATG 1330
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AGAATGTTCCGGTTCTCGAAGCTGTGGAAAGCCATAACAGTATCAGAAATTATTACCATG 1314
Query 1331 GGAATCATATTGCTGGTGCAAACCTCAGCGAAACAACCCCTCGAACATTTGCTTCGAAAC 1390
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1315 GGAATCATATCGCTGGTGCAAACCTCAGTGAAACAACTCCTCGAACATTTGCTTCGAAAC 1374
Query 1391 TGCAGTCAAGAAGTCCCAAATACATATCTTTGCTCAACCATCTTAGAATATATCTACCAG 1450
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1375 TGCAATCAAGAAGTCCCAAATACATATCTTTGCTCAACCATCTAAGAATATATCTACCAG 1434
Query 1451 AGCTTTTTCCGAACTTAGACAAGGTAGTGTTCTTAGATGATGATATAGTGATACAGAAAG 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1435 AGCTTTTTCCGAACTTAGACAAGGTAGTGTTCTTAGATGATGATATAGTGATACAGAGAG 1494
Query 1511 ATTTATCTCCGCTTTGGGATATTGACCTTAACGGGAAGGTTAATGGAGCTGTGGAGACTT 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 ATTTATCTCCGCTTTGGGATATTGACCTTAACGGGAAGGTTAATGGAGCTGTGGAGACTT 1554
Query 1571 GTCGAGGAGAAGACGTATGGGTTATGTCAAAGCGTCTTAGGAACTACTTCAATTTTTCTC 1630
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1555 GTCGAGGAGAAGATGTATGGGTTATGTCAAAGCGTCTTAGGAACTACTTCAATTTCTCTC 1614
Query 1631 ACCCGCTCATCGCAAAGCATTTAGATCCCGAAGAATGTGCTTGGGCTTATGGAATGAATA 1690
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1615 ACCCCCTCATCGCAAAGCATTTGGATCCCGAAGAATGTGCTTGGGCTTATGGAATGAATA 1674
Query 1691 TCTTTGATCTACGGACTTGGAGGAAGACAAATATCAGAGAAACGTATCATTCTTGGCTTA 1750
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1675 TCTTCGATCTACGGACTTGGAGGAAGACAAATATCAGAGAAACTTATCATTCTTGGCTTA 1734
Query 1751 AAGAGAATCTGAAGTCGAATCTAACAATGTGGAAACTTGGAACATTGCCTCCTGCTCTAA 1810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 AAGAGAATCTGAAGTCGAATCTAACAATGTGGAAACTTGGAACATTGCCTCCTGCTCTAA 1794
Query 1811 TAGCATTTAAAGGTCATGTTCAGCCAATAGATTCCTCTTGGCATATGCTTGGATTAGGTT 1870
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1795 TAGCATTTAAAGGTCATGTTCAGCCAATAGATTCGTCTTGGCATATGCTTGGATTAGGTT 1854
Query 1871 ATCAGAGCAAGACCAACTTAGAAAATGCGAAGAAAGCTGCAGTGATTCATTACAATGGCC 1930
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 ATCAGAGCAACACCAACTTAGAAAATGCGAAGAAAGCTGCAGTGATTCATTACAATGGCC 1914
Query 1931 AATCAAAGCCGTGGCTTGAGATAGGTTTCGAGCATCTCAGACCATTCTGGACAAAATATG 1990
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 AATCAAAGCCGTGGCTCGAGATAGGTTTCGAGCATCTCAGACCATTCTGGACAAAATATG 1974
Query 1991 TTAACTACTCCAATGATTTCATTAAGAATTGTCATATCTTGGAATAGCAAACAGAAAGCT 2050
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1975 TTAACTACTCCAATGATTTCATAAAGAATTGTCATATCTTGGAATAGCAAACAGAAAGCT 2034
Query 2051 TGCATATAATCTCGAAGCAGACTGGGGATTTTGCGGGTTCTGCAGATTTACTCGGAATTT 2110
| || ||||||| |||||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct 2035 TCCAGATAATCTAGAAGCAGACTGGAGATTTCGCGGGTTCTGCAGATTTACTCGGAGTTT 2094
Query 2111 AGCTGGACCATGAAAGACCAGTTGCAGAGCAGCAGAGAAA-GAGA-A-AGATAGA-AA-T 2165
|||||||| |||||| ||||||||||||||||||| ||| |||| | ||| ||| || |
Sbjct 2095 AGCTGGACAATGAAA--CCAGTTGCAGAGCAGCAGAAAAAAGAGAGAGAGAGAGAGAAAT 2152
Query 2166 AAAGATTCATTCTTCTGTAAAAATAGAAGGTACCCTTTTTGAGATTCTTTTTGGTTTTGA 2225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2153 AAAGATTCATTCTTCTGTAAAAATAGAAGGTACCCTTTTTGAGATTCTTTTTGGTTTTGA 2212
Query 2226 AGTAAAGATTCCAATTTTGGATCTGTTATAAGAACAAGGAAGGTTTAAGGACATCACC-A 2284
||||||||||||||||||||||||||||||||| || |||||||||||||||| | || |
Sbjct 2213 AGTAAAGATTCCAATTTTGGATCTGTTATAAGATCAGGGAAGGTTTAAGGACACCCCCCA 2272
Query 2285 -GAAGAAATTGGATTTTGGTCATGATCACAACAGTCC-AAGGACCAACAACACACTGTTG 2342
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2273 AGAAGAAATTGGATTTTGGTCATGATCACAACAGTCCCAAGGACCAACAACACACTGTTG 2332
Query 2343 CATTTGCTCCACTTGTACTCtttt-tatttttttGGTTCGATTTTTGACAGTTAAAATTC 2401
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2333 CATTTGCTCCACTTGTACTCTTTTATATTTTTTTGGTTCGATTTTTGACAGTTAAAATTC 2392
Query 2402 CACATATTTTTTACTAAATGATTTAGTTTTAGGGATTTTATATGGACATTATTGTTTTGT 2461
||||| |||||| | | ||| | |||||||||||||||||||||||| |||||
Sbjct 2393 CACAT-TTTTTT--T----G-TTT--T---AGGGATTTTATATGGACATTATTGCTTTGT 2439
Query 2462 TAAGGTCTCTAATT 2475
||||||| ||||||
Sbjct 2440 TAAGGTCCCTAATT 2453
> Ahg326001 jgi|Araly1|326001|fgenesh1_pm.C_scaffold_6001221
Length=1722
Score = 1807 bits (978), Expect = 0.0
Identities = 1407/1614 (87%), Gaps = 30/1614 (2%)
Strand=Plus/Plus
Query 433 AGGATGCAGCTTCACATATCGCCTAGCATGAGAAGCATTACGATATCGAGCAGCAATGAG 492
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 130 AGGATGCAGCTTCACATATCGCCGAGCATGAGAAGCATCACGATTTCGAGCAGCAATGAG 189
Query 493 TTTATTGATTTGATGAAGATCAAAGTCGCAGCTCGTCACATCTCTTACCGAACTCTCTTC 552
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 190 TTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACATCTCTTACCGAACTCTCTTC 249
Query 553 CACACTATCTTAATCCTCGCTTTCTTGTTACCTTTTGTTTTCATCCTAACCGCTGTTGTT 612
||||| ||||||||||||||||||||||| |||||||| |||||||| |||||| |||||
Sbjct 250 CACACCATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTCTTCATCCTCACCGCTCTTGTT 309
Query 613 ACCCTTGAAGGTGTCAACAAGTGCTCCTCTTTTGATTGTTTCGGGAGGCGGCTAGGACCA 672
||||| |||||||||||||| |||||||| | || ||||||||| |||| ||
Sbjct 310 ACCCTCGAAGGTGTCAACAAATGCTCCTC----CA----TT-GGGAGGCGGATAGGTCCG 360
Query 673 CGTCTTCTTGGTAGGATAGATGATTCAGAGCAGAGACTAGTTAGAGATTTTTACAAAATT 732
||||||||||||||| |||||||||| || ||||||||| |||||| ||||| ||||||
Sbjct 361 CGTCTTCTTGGTAGGGTAGATGATTC--AG-AGAGACTAGCTAGAGACTTTTATAAAATT 417
Query 733 CTAAATGAAGTAAGCACTCAAGAAATTCCAGATGGTTTAAAGCTTCCAGAGTCTTTTAGT 792
||||| |||||||| ||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 418 CTAAACGAAGTAAGTACTCAAGAAATTCCAGATGGTTTGAAGCTTCCAAATTCTTTTAGT 477
Query 793 CAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTT 852
||||| ||||| ||||||||||| |||||||||||||| ||||||||||| || || |
Sbjct 478 CAACTTGTTTCAGATATGAAGAATAACCACTATGATGCAAAAACATTTGCTCTTGTGCTG 537
Query 853 CGAGCTATGGTAGAGAAGTTTGAAAGGGATTTAAGGGAATCCAAATTTGCAGAACTCATG 912
||||| ||| | |||||||||||| ||||| | |||||||| |||||||||||||| |||
Sbjct 538 CGAGCCATGATGGAGAAGTTTGAACGGGATATGAGGGAATCGAAATTTGCAGAACTTATG 597
Query 913 AACAAGCACTTTGCTGCAAGTTCAATTCCAAAAGGAATTCACTGTCTCTCTTTAAGACTA 972
|||||||||||||| || ||||| ||||| ||||| ||||| ||||||||| |||| ||
Sbjct 598 AACAAGCACTTTGCAGCGAGTTCCATTCCCAAAGGCATTCATTGTCTCTCTCTAAGGCTG 657
Query 973 ACCGATGAATATTCCTCCAATGCTCATGCCCGGAGACAGCTTCCTTCCCCGGAGCTTCTC 1032
|| |||||||||||||| ||||||||||| || ||||| |||||||| || ||| |||||
Sbjct 658 ACAGATGAATATTCCTCGAATGCTCATGCTCGTAGACAACTTCCTTCTCCAGAGTTTCTC 717
Query 1033 CCTGTTCTCTCAGACAATGCTTACCACCATTTTGTTCTAG-CTACAGATAATATCTTAGC 1091
|||||||| ||||| |||||||||||||||||| |||| | | || || ||||| || ||
Sbjct 718 CCTGTTCTTTCAGATAATGCTTACCACCATTTTATTCT-GTCCACGGACAATATTTTGGC 776
Query 1092 TGCATCGGTTGTGGTCTCATCTGCTGTTCAATCATCTTCAAAACCCGAGAAAATTGTCTT 1151
||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 777 TGCCTCAGTTGTGGTCTCATCCGCTGTTCAGTCATCTTCAAAACCCGAGAAAATTGTCTT 836
Query 1152 CCATGTTATCACAGACAAGAAAACCTATGCGGGTATGCATTCTTGGTTTGCACTCAATTC 1211
|| | ||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 837 TCACATCATCACAGACAAGAAAACCTATGCGGGTATGCATTCATGGTTTGCGCTTAATTC 896
Query 1212 TGTTGCTCCTGCGATTGTTGAAGTGAAAAGCGTTCATCAGTTTGATTGGTTAACAAGAGA 1271
|||||| || || ||||| || || ||| | |||||||||||||| ||||| || |||||
Sbjct 897 TGTTGCGCCAGCTATTGTCGAGGTCAAAGGTGTTCATCAGTTTGACTGGTTGACGAGAGA 956
Query 1272 GAATGTTCCAGTTCTT-GAAGCTGTGGAAAGCCATAACAGTATCAGAAATTATTACCATG 1330
||||||||| ||| || |||||||||||||||||||| || |||| || ||||| ||||
Sbjct 957 GAATGTTCCGGTT-TTGGAAGCTGTGGAAAGCCATAATGGTGTCAGGAACTATTATCATG 1015
Query 1331 GGAATCATATTGCTGGTGCAAACCTCAGC-GAAACAACCCCTCGAACATTTGCTTCGAAA 1389
|||||||| | ||||| |||||||||| | |||||||| || |||||||||||||| |||
Sbjct 1016 GGAATCATGTCGCTGGGGCAAACCTCA-CAGAAACAACTCCACGAACATTTGCTTCAAAA 1074
Query 1390 CTGCAGTCAAGAAGTCCCAAATACATATCTTTGCTCAACCATCTTAGAATATATCTACCA 1449
||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1075 TTGCAGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCA 1134
Query 1450 GAGCTTTTTCCGAACTTAGACAAGGTAGTGTTCTTAGATGATGATATAGT-GATACAGAA 1508
|||||||| |||||||| |||||||| || |||||||| ||||||||||| | | |||
Sbjct 1135 GAGCTTTTCCCGAACTTGGACAAGGTGGTCTTCTTAGACGATGATATAGTTG-TCCAGGG 1193
Query 1509 AGATTTATCTCCGCTTTGGGATATTGACCTTAACGGGAAGGTTAATGGAGCTGTGGAGAC 1568
||| ||| |||| ||||||||| |||||||| || || || |||||||| || |||||
Sbjct 1194 AGACTTAACTCCACTTTGGGATGTTGACCTTGGTGGTAATGTCAATGGAGCAGTAGAGAC 1253
Query 1569 TTGTC-GAGGAGAAGACGTATGGGTTATGTCAAAGCGTCTTA-GGAACTACTTCAATTTT 1626
||| | | || ||||| | |||||| |||||||||||| ||| ||||||||||||||||
Sbjct 1254 TTG-CAGGGGTGAAGATGAATGGGTGATGTCAAAGCGT-TTAAGGAACTACTTCAATTTC 1311
Query 1627 TCTCACCCGCTCATCGCAAAGCATTTAGATCCCGAAGAATGTGCTTGGGCTTATGGAATG 1686
||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 1312 TCTCATCCGCTCATTGCAAAGCATTTAGATCCTGAAGAATGTGCTTGGGCATATGGTATG 1371
Query 1687 AATATCTTTGATCTACG-GACTTGGAGGAAGACAAATATCAGAGAAACGTATCATTCTTG 1745
||| | || ||||||| | |||||||||| ||||||||||||||||||||||| |||||
Sbjct 1372 AATGTGTTCGATCTACAAG-CTTGGAGGAAAACAAATATCAGAGAAACGTATCACTCTTG 1430
Query 1746 GCTTAAAGAGAATCTGAAGTCGAATCTAACAATGTGGAAACTTGGAACATTGCCTCCTGC 1805
||||| ||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1431 GCTTAGAGAGAATCTAAAGTCGAATCTGACAATGTGGAAGCTTGGAACCTTGCCTCCTGC 1490
Query 1806 TCTAATAGCATTTAAAGGTCATGTTCAGCC-AATAGATTCCTCTTGGCATATGCTTGGAT 1864
||| || || || || ||||| ||||| | |||||| || || ||||||||||||||||
Sbjct 1491 TCTGATCGCGTTCAAGGGTCACGTTCA-CATAATAGACTCGTCATGGCATATGCTTGGAT 1549
Query 1865 TAGGTTATCAGAGCAAGACCAACTTAGAAAATGCGAAGAAAGCTGCAGTGATTCATTACA 1924
|||| |||||||||||||||||| ||||| ||| |||||||||||||||||| || ||||
Sbjct 1550 TAGGGTATCAGAGCAAGACCAACATAGAACATGTGAAGAAAGCTGCAGTGATCCACTACA 1609
Query 1925 ATGGCCAATCAAAGCCGTGGCTTGAGATAGGTTTCGAGCATCT-CAGACCATTCTGGACA 1983
|||| ||||||||||| ||||| ||||| |||||||||||||| | | ||||||||||||
Sbjct 1610 ATGGGCAATCAAAGCCATGGCTGGAGATTGGTTTCGAGCATCTGCGG-CCATTCTGGACA 1668
Query 1984 AAATATGTTAACTACTCCAATGATTTCATTAAGAATTGTCATATCTTGGAATAG 2037
||||| || |||||||| ||||||||||| ||||| ||||| || ||||| |||
Sbjct 1669 AAATACGTCAACTACTCAAATGATTTCATAAAGAACTGTCACATATTGGAGTAG 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94311446620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5