BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G01050.1

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927674 jgi|Araly1|927674|scaffold_300131.1                        630    3e-180


> Ahg927674 jgi|Araly1|927674|scaffold_300131.1
Length=397

 Score =  630 bits (341),  Expect = 3e-180
 Identities = 363/374 (97%), Gaps = 0/374 (0%)
 Strand=Plus/Plus

Query  206  GTTGGTTGCTTCTTGGATAAATGGCAGAAGTCCATAATCAACTAGAGATCAAGTTTCGGT  265
            |||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GTTGTTTGGTTCTTGGATAGATGGCAGAAGTCCATAATCAACTAGAGATCAAGTTTCGGT  60

Query  266  TAACCGATGGTTCGGATATCGGTCCTAAAGCATTCCCTGATGCTACAACTGTTTCGGCTT  325
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  61   TAACCGATGGTTCGGATATCGGTCCTATAGCATTCCCTGATGCTACAACTGTTTCGGCTT  120

Query  326  TGAAGGAAACTGTTATTTCTGAATGGCCAAGAGAGAAGGAGAATGGGCCGAAAACAGTGA  385
            |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct  121  TGAAGGAAACTGTTATTTCTGAATGGCCAAGAGAGAAGGAGAATGGACCGAGAACAGTGA  180

Query  386  AAGAGGTGAAGTTGATAAGCGCAGGGAAGGTATTGGAGAACAGCAAGACGGTTAAAGACT  445
            |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct  181  AAGAGGTGAAGTTGATCAGCGCAGGGAAGGTATTGGAGAACAACAAGACGGTTAAAGACT  240

Query  446  ACCGAAGTCCTGTCTCTAATCTCGCAGGCGCTGTCACCACAATGCACGTTATCATCCAAG  505
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  241  ACCGAAGTCCTGTCTCTAATCTTGCAGGCGCTGTCACCACAATGCACGTTATCATCCAAG  300

Query  506  CTCCGGTTACGGAAAAAGAAAAGAAGCCTAAAGGTGACCCGAAGATGAACAAATGCGTCT  565
            |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  301  CTCCGGTTGCGGAAAAAGAAAAGAAGCCAAAAGGTGACCCGAAGATGAACAAATGCGTCT  360

Query  566  GTTCAGTCATGTAA  579
            ||||||||||||||
Sbjct  361  GTTCAGTCATGTAA  374



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21176351895


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5