BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01070.1
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317083 jgi|Araly1|317083|fgenesh1_pm.C_scaffold_3000099 717 0.0
> Ahg317083 jgi|Araly1|317083|fgenesh1_pm.C_scaffold_3000099
Length=522
Score = 717 bits (388), Expect = 0.0
Identities = 463/498 (93%), Gaps = 9/498 (2%)
Strand=Plus/Plus
Query 68 ATGGCGAGAGTTGCGGTTTTGGTTGCAGG-GGCGGTGCTGGCTTTTCTGCTGGCGGCGAC 126
||||||||| |||||||||||||||| || ||||||||| || ||| | ||| |||||||
Sbjct 1 ATGGCGAGACTTGCGGTTTTGGTTGC-GGCGGCGGTGCTTGC-TTT-T-CTGACGGCGAC 56
Query 127 GAATGTGACGGCGAAGAGGTGGACGGTGGGTGATAACAAGTTCTGGAATCCTAATATCAA 186
| | ||| | ||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 57 GGAGGTGGCTGCGAAGAAGTGGACGGTGGGCGATAACAAGTTCTGGAATCCTAATATCAA 116
Query 187 CTATACCATTTGGGCTCAGGACAAACATTTCTACCTCGACGATTGGCTCTATTTTGTATA 246
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 117 CTATACCATTTGGGCTCAGGACAAACATTTCTACCTTGACGATTGGCTCTATTTTGTGTA 176
Query 247 TGAGAGAAACCAATACAACGTTATAGAAGTGAACGAGACGAACTACATAAGCTGCAATCC 306
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 177 TGAGAGAAACCAATACAACGTCATAGAAGTGAACGAAACCAACTACATAAGCTGCAATCC 236
Query 307 CAATAACCCGATCGCAAATTGGAGTCGTGGAGCTGGAAGGGACTTGGTTCATCTCAATGT 366
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 CAATAACCCGATCGCTAATTGGAGTCGTGGAGCTGGAAGGGACTTGGTTCATCTTAATGT 296
Query 367 GACAAGGCATTACTATCTGATTAGTGGTAATGGTGGTGGATGTTACGGAGGTATGAAGCT 426
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 297 GACAAGGCATTACTATCTGATTAGTGGTAATGGTGGTGGATGTTACGGCGGTATGAAGCT 356
Query 427 CGCTGTTTTAGTTGAGAAACCGCCTCCTCCACCAGCTGCAGCACCTAACAAGAACAGTGC 486
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 357 CGCTGTTTTAGTTGAGAAACCGCCTCCTCCACCAGCTGCAGCACCTATCAAGAACAGTGC 416
Query 487 AAGAAGAACCTTCT-CGGTCTCCGGTTTTGCCTA-TCAGTTTCTTATTCCAGTAGCTGTT 544
|| ||||||||| | | |||| |||||||| | ||||||| ||||||| |||||||||
Sbjct 417 AACAAGAACCTT-TACCCTCTCGGGTTTTGCA-AGTCAGTTTGTTATTCCGGTAGCTGTT 474
Query 545 TTCGCAGCAGTTGGGACA 562
|||||||| |||||||||
Sbjct 475 TTCGCAGCGGTTGGGACA 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5