BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01080.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317082 jgi|Araly1|317082|fgenesh1_pm.C_scaffold_3000098 1317 0.0
> Ahg317082 jgi|Araly1|317082|fgenesh1_pm.C_scaffold_3000098
Length=1407
Score = 1317 bits (713), Expect = 0.0
Identities = 959/1070 (90%), Gaps = 47/1070 (4%)
Strand=Plus/Plus
Query 237 TCTTCTCACCTCGCCCATGTTCTTTCCCCCGCAGTCGTCAGCTCATACCGGC-TT-T--A 292
|||||||||||| |||||||||||||| |||||| || |||| || |||||| || | |
Sbjct 351 TCTTCTCACCTCTCCCATGTTCTTTCCTCCGCAGGCGCCAGCCCAGACCGGCTTTGTCCA 410
Query 293 -T-TCAACCACGGCAGC-AGTCACAACC-GCA--ACCACAACGACCAGACACGTTTCCTC 346
| || |||| || || | | ||||| || |||| |||||||||||| |||||||
Sbjct 411 CTCGCAGCCACAGCCGCAACT-GCAACCACCAGGTCCACCACGACCAGACACATTTCCTC 469
Query 347 ACCATATGCCACCATCGACATCCGTCGCCGTCCATGGTCGTCAATCTTTAGACGTTTC-A 405
| |||||||| ||||| |||||| |||||||||||| |||||||| || || || || |
Sbjct 470 ATCATATGCCGCCATCAACATCCACCGCCGTCCATGGCCGTCAATCATTCGAAGTGTCGA 529
Query 406 --CAAGTAGATCAAAGAGCTCGAAACCATTATAATAATCCGGGG---AATAACAATAATA 460
|||| |||||||||||| ||||||| || |||||||||||| |||||||||||||
Sbjct 530 CGCAAGGCGATCAAAGAGCTAGAAACCACTACAATAATCCGGGGAATAATAACAATAATA 589
Query 461 ACCGGTCGTATAACGTTGTGAACGTTGATAAACCGGCGGATGACGGTTATAACTGGAGGA 520
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 590 ACCGGTCGTATAACGTGGTGAATGTTGATAAACCGGCGGATGACGGTTATAACTGGAGGA 649
Query 521 AGTACGGACAAAAGCCTATCAAAGGGTGTGAATATCCAAGGAGTTATTACAAATGTACAC 580
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 650 AGTACGGACAGAAGCCGATCAAAGGGTGTGAATATCCAAGGAGTTATTACAAATGCACAC 709
Query 581 ATGTTAACTGTCCGGTGAAGAAGAAAGTCGAACGGTCATCGGATGGACAGATCACTCAGA 640
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 710 ATGTTAACTGTCCGGTTAAGAAGAAAGTTGAACGGTCATCGGATGGACAGATCACTCAGA 769
Query 641 TCATTTACAAAGGTCAACATGATCACGAGAGGCCTCAGAATCGCCGTGGCGGTGGAGGCA 700
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TAATTTACAAGGGTCAACATGATCACGAGAGGCCTCAGAATCGCCGTGGCGGTGGAGGCA 829
Query 701 GAGATTCCACTGA-------G-----------GTTGGTGGTGCAGGGCAAATGATGGAAT 742
||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 830 GAGATTCCACTGAGGTTGGTGATATTCATTTCGTTGGTGGTGCAGGGCAAATGATGGAAT 889
Query 743 CTAGTGATGATAGTGGTTATCGTAAGGATCatgatgatgatgatgatgatgatgaagatg 802
|||||||||||||||||||| ||||||||||||| |||||| | |||||||||| || |
Sbjct 890 CTAGTGATGATAGTGGTTATGGTAAGGATCATGAAGATGATAACAATGATGATGATGACG 949
Query 803 atgaagatCTTCCGGCTTCAAAGATAAGAAGAATAGACGGTGTGTCGACGACTCACCGGA 862
| || ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 950 ACGATGATCTTCCGGCTTCAAAGATAAGAAAAATAGACGGAGTGTCGACGACTCACCGGA 1009
Query 863 CGGTGACCGAGCCTAAGATTATCGTTCAGACAAAAAGTGAAGTCGATCTTCTCGACGATG 922
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CGGTGACTGAGCCTAAGATTATCGTTCAGACAAAAAGTGAAGTCGATCTTCTCGACGATG 1069
Query 923 GCTATAGGTGGCGTAAGTACGGACAAAAAGTTGTCAAAGGAAATCCCCATCCAAGGAGCT 982
||||||| ||||| |||||||| |||||||||||||||||||||||| |||| |||||||
Sbjct 1070 GCTATAGATGGCGCAAGTACGGGCAAAAAGTTGTCAAAGGAAATCCCTATCCGAGGAGCT 1129
Query 983 ATTATAAATGTACAACGCCAAATTGTACGGTCCGTAAACATGTAGAGAGAGCTTCCACGG 1042
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1130 ATTATAAATGTACAACGCCAAATTGTACAGTCCGTAAACATGTAGAGAGAGCTTCAACGG 1189
Query 1043 ATGCTAAGGCTGTGATTACAACTTACGAAGGTAAACACAATCACGATGTCCCTGCCGCTA 1102
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1190 ATGCTAAGGCTGTGATTACAACTTACGAAGGTAAACACAACCACGATGTCCCTGCCGCTA 1249
Query 1103 GAAACGGTACCGCGGCAGCAACCGCAGCTGCGGTGGGGCCGTCTGACCACCATCGTATGA 1162
||||||||||||| ||| || | |||| || | ||||||||||||||||||||
Sbjct 1250 GAAACGGTACCGC---AGCT---GC-G--GCGG-GGA-C-GTCTGACCACCATCGTATGA 1297
Query 1163 GATCAATGTCGGGGAACAATATGCAACAACATATGAGTTTCGGTAACAATAATAACACAG 1222
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1298 GATCAATGTCGGGGAACAATATGCAACAACATATGAGTTTTGGTAACAATAATAACACTG 1357
Query 1223 GCCAATCTCCGGTTCTTTTGAGGTTGAAAGAAGAGAAAATCACAATTTGA 1272
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 GCCAATCTCCGGTTCTTTTGAGGTTGAAAGAAGAGAAAATCACAATTTGA 1407
Score = 364 bits (197), Expect = 7e-100
Identities = 227/242 (94%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGTTGAAGACGATGTATCTTTGATAAGAACGACGACGTTAGTGGCACCAACAAGA 60
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCGGTTGAAGACGATGTATCTTCGATAAGAACGACGACGTTAGTGGCGCCAACAAGA 60
Query 61 CCCACGATTACAGTTCCTCATAGACCTCCGGCGATCGAAACGGCGGCGTATTTCTTTGGC 120
||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct 61 CCCACGATTACAGTTCCCCAAAGACCTCCTGCGATCGAAACGGCGGCTTATTTCTTTGGC 120
Query 121 GGTGGAGATGGGCTTAGTCTAAGCCCAGGGCCACTTTCTTTTGTCTCTTCTTTGTTTGTT 180
|||||||||||||||||||| |||||||| || |||||||||||||| |||||||| |||
Sbjct 121 GGTGGAGATGGGCTTAGTCTGAGCCCAGGACCTCTTTCTTTTGTCTCGTCTTTGTTCGTT 180
Query 181 GATAACTTCCCTGACGTCTTGACGCCGGATAACCAACGGACGACGTCGTTTACTCATCTT 240
|| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct 181 GACAACTTCCCTGACGTCTTGACGCCGGATAACCAACGGACAACGTCGTTTTCTCAGCTT 240
Query 241 CT 242
||
Sbjct 241 CT 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5