BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01090.2
Length=2208
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317081 jgi|Araly1|317081|fgenesh1_pm.C_scaffold_3000097 2582 0.0
Ahg484683 jgi|Araly1|484683|fgenesh2_kg.5__675__AT3G29160.2 874 0.0
> Ahg317081 jgi|Araly1|317081|fgenesh1_pm.C_scaffold_3000097
Length=1530
Score = 2582 bits (1398), Expect = 0.0
Identities = 1482/1523 (97%), Gaps = 3/1523 (0%)
Strand=Plus/Plus
Query 430 CAGGCAGTAGAAGTGGGGTAGAATCGATTCTACCAAATTACAAGCTTGGGAGAACTCTTG 489
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 CAGGCGGTAGAAGTGGGGTAGAATCGATTCTACCAAATTACAAGCTTGGGAGAACTCTTG 70
Query 490 GTATTGGTTCCTTTGGTAGGGTGAAGATAGCTGAGCATGCATTGACAGGACATAAGGTTG 549
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 71 GTATTGGTTCCTTTGGTAGGGTGAAGATAGCTGAGCACGCATTGACAGGACATAAAGTTG 130
Query 550 CTATCAAGATCCTCAATCGTCGCAAAATCAAGAACATGGAGATGGAGGAGAAAGTGAGGA 609
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 131 CAATCAAGATCCTCAATCGTCGCAAAATCAGGAACATGGAGATGGAGGAGAAAGTGAGGA 190
Query 610 GAGAGATCAAAATCTTGAGACTATTTATGCATCCTCACATCATCCGTCTCTATGAGGTTA 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 GAGAGATCAAAATCTTGAGACTATTTATGCATCCTCACATCATCCGTCTCTATGAGGTTA 250
Query 670 TAGAGACTCCCACAGATATTTATCTTGTCATGGAGTATGTGAACTCTGGTGAGCTATTTG 729
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 TAGAGACTCCGACAGATATTTATCTTGTCATGGAGTATGTGAACTCTGGTGAGCTATTTG 310
Query 730 ACTATATTGTTGAGAAGGGTAGATTGCAGGAGGATGAGGCGAGGAACTTTTTTCAGCAGA 789
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 311 ACTACATTGTAGAGAAGGGTAGATTGCAGGAGGATGAGGCGAGGAACTTCTTTCAGCAGA 370
Query 790 TAATATCAGGAGTGGAATACTGCCATCGAAACATGGTGGTTCACAGAGACCTCAAGCCTG 849
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 371 TAATATCTGGAGTGGAATACTGCCATCGAAATATGGTGGTTCACAGAGACCTCAAGCCTG 430
Query 850 AAAACTTGCTTTTGGACTCTAAATGCAATGTAAAGATTGCTGATTTTGGCCTGAGCAACA 909
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 431 AAAACTTGCTTTTGGATTCTAAATGCAATGTAAAGATTGCTGATTTTGGCCTGAGCAATA 490
Query 910 TAATGCGAGATGGTCATTTTTTGAAGACAAGTTGTGGAAGTCCAAATTATGCCGCTCCAG 969
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 491 TAATGCGAGATGGTCATTTTTTGAAGACAAGTTGTGGAAGTCCAAATTATGCGGCTCCAG 550
Query 970 AGGTAATTTCGGGCAAGTTATATGCTGGCCCTGAAGTAGATGTCTGGAGCTGTGGTGTGA 1029
|||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 551 AGGTCATTTCGGGAAAATTATATGCTGGGCCTGAAGTAGATGTCTGGAGCTGTGGTGTGA 610
Query 1030 TACTCTACGCTCTTCTCTGTGGGACGCTTCCATTTGATGATGAAAACATTCCCAACCTTT 1089
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 611 TACTCTACGCTCTTCTCTGTGGGACTCTTCCATTTGATGATGAAAACATTCCCAACCTTT 670
Query 1090 TTAAGAAGATAAAGGGAGGGATATACACATTACCTAGCCATTTATCTCCTGGTGCTAGAG 1149
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 671 TTAAGAAGATAAAGGGAGGGATATATACATTACCTAGCCATTTATCTGCTGGTGCTAGAG 730
Query 1150 ATTTGATCCCCCGGATGCTTGTAGTTGACCCCATGAAACGAGTAACCATCCCTGAGATCC 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 ATTTGATCCCCCGGATGCTTGTAGTTGACCCCATGAAACGAGTAACCATCCCTGAGATCC 790
Query 1210 GGCAACACCCTTGGTTCCAAGCTCATCTTCCGAGGTATTTAGCTGTTCCTCCTCCAGATA 1269
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 791 GGCAACACCCTTGGTTCCAAGCTCACCTTCCGAGGTATTTAGCTGTTCCTCCTCCAGATA 850
Query 1270 CTGTGCAACAGGCAAAAAAGATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGAT 1329
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 CAGTGCAACAGGCGAAAAAGATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGAT 910
Query 1330 TTGACAGAAACCACCTCATCGAATCGCTCCGCAACCGAACCCAGAATGATGGCACTGTGA 1389
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 911 TTGACAGAAACCACCTCATTGAATCTCTCCGCAACCGGACCCAGAATGATGGCACTGTGA 970
Query 1390 CGTACTATCTGATACTGGACAATCGTTTCCGTGCCTCTAGTGGTTATCTCGGGGCTGAGT 1449
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 971 CATACTATCTGATACTGGACAATCGTTTCCGTGCCTCTAGTGGTTATCTCGGGGCCGAGT 1030
Query 1450 TTCAAGAGACCATGGAAGGTACTCCCCGTATGCATCCAGCAGAAAGCGTTGCTTCACCTG 1509
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1031 TTCAAGAGACCATGGAAGGTACTCCCCGTATGCATCCAGCAGAAAGTGTCGCTTCACCTG 1090
Query 1510 TTAGCCATCGGCTTCCAGGACTGATGGAATATCAAGGAGTTGGCTTGAGATCTCAATACC 1569
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TTAGCCATCGGCTTCCAGGATTGATGGAATATCAAGGAGTTGGCTTGAGATCTCAATACC 1150
Query 1570 CTGTTGAGAGAAAATGGGCTCTTGGACTTCAGTCTCGGGCTCATCCCCGTGAAATAATGA 1629
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CTGTTGAAAGAAAATGGGCTCTTGGACTTCAGTCTCGGGCTCATCCCCGTGAAATAATGA 1210
Query 1630 CGGAAGTCCTGAAAGCCCTGCAAGATTTGAATGTATGTTGGAAGAAGATAGGGCACTACA 1689
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1211 CGGAAGTCCTGAAAGCCCTGCAAGATTTGAATGTGTGTTGGAAGAAGATAGGGCACTACA 1270
Query 1690 ACATGAAGTGCAGATGGGTTCCTAACAGCAGCGCAGATGGTATGCTCAGTAACTCGATGC 1749
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1271 ACATGAAGTGCAGATGGGTTCCTAACAGCA---CAGATGGTATGCTCAGTAACTCGATGC 1327
Query 1750 ACGATAACAACTACTTTGGAGACGAGTCCAGCATAATAGAGAACGAAGCAGCTGTTAAGT 1809
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1328 ACGATAGCAACTACTTTGGAGACGAGTCCAGCATAATAGAGAACGATGCAGCTGTTAAGT 1387
Query 1810 CGCCCAATGTTGTCAAGTTTGAAATTCAGTTGTATAAAACTCGGGACGACAAGTATCTAC 1869
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 CGCCGAATGTTGTCAAGTTTGAAATTCAGTTGTATAAAACTCGGGACGACAAGTATCTAC 1447
Query 1870 TGGATTTGCAGAGAGTACAAGGTCCTCAGTTCTTGTTCTTGGATCTGTGTGCTGCTTTTC 1929
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1448 TGGATTTGCAGAGAGTACAAGGTCCTCAGTTCTTGTTCTTGGATCTCTGTGCTGCTTTTC 1507
Query 1930 TTGCTCAGCTCCGAGTCCTCTGA 1952
|||||||||||||||||||||||
Sbjct 1508 TTGCTCAGCTCCGAGTCCTCTGA 1530
> Ahg484683 jgi|Araly1|484683|fgenesh2_kg.5__675__AT3G29160.2
Length=1875
Score = 874 bits (473), Expect = 0.0
Identities = 1192/1530 (78%), Gaps = 85/1530 (6%)
Strand=Plus/Plus
Query 443 TGGGGTAGAATCGATTCTACCAAATTACAAGCTTGGGAGAACTCTTGGTATTGGTTCCTT 502
||| || ||||||||| |||| |||||||||||||| | ||||||||| ||||| || ||
Sbjct 150 TGGAGTGGAATCGATTTTACCGAATTACAAGCTTGGTAAAACTCTTGGAATTGGATCTTT 209
Query 503 TGGTAGGGTGAAGATAGCTGAGCATGCATTG--ACAGGACATAAGGTTGCTATCAAGATC 560
||| | |||||| ||||| ||||||| ||| ||||| ||||||||||||||||| |||
Sbjct 210 TGGGAAGGTGAAAATAGCAGAGCATG--TTGTCACAGGGCATAAGGTTGCTATCAAAATC 267
Query 561 CTCAATCGTCGCAAAATCAAGAACATGGAGATGGAGGAGAAAGTGAGGAGAGAGATCAA- 619
||||||||||| || |||||||| ||||| ||||| ||||||||||| || ||||| ||
Sbjct 268 CTCAATCGTCGTAAGATCAAGAATATGGAAATGGAAGAGAAAGTGAGAAGGGAGATTAAG 327
Query 620 AATCTTGA-GAC-TATTTATGCATCCTCACATCATCCGTCTCTATGAGGTTATAGAGACT 677
| || | | | | | |||||||||||||| || || || | |||||||| ||||||||
Sbjct 328 ATTC-T-ACG-CTTGTTTATGCATCCTCATATTATTCGGCAATATGAGGTAATAGAGAC- 383
Query 678 CCC-ACAGATATTTATCTTGTCATGGAGTATGTGAACTCTGGTGAGCTATTTGACTATAT 736
||| | || |||||| |||||||||||||||| || || || ||||| ||||| |||||
Sbjct 384 CCCAAGTGACATTTATGTTGTCATGGAGTATGTAAAGTCCGGAGAGCTCTTTGATTATAT 443
Query 737 TGTTGAGAAGGGTAGATTGCAGGAGGATGAGGCGAGGAACTTTTTTCAGCAGATAATATC 796
||||||||| || |||||||| ||||||||||| | |||||||| ||||||||||||||
Sbjct 444 TGTTGAGAAAGGCAGATTGCAAGAGGATGAGGCTCGTAACTTTTTCCAGCAGATAATATC 503
Query 797 AGGAGTGGAATACTGCCATCGAAACATGGTGGTTCACAGAGACCTCAAGCCTGAAAACTT 856
|| || || || |||||||| || ||||| || || |||||||| |||||||| || ||
Sbjct 504 TGGTGTAGAGTATTGCCATCGTAATATGGTTGTCCATAGAGACCTGAAGCCTGAGAATTT 563
Query 857 GCTTTTGGACTCTAAATGCAATGTAAAGATTGCTGATTTTGGCCTGAGCAACATAATGCG 916
|| ||||| || | ||||| | |||||||| || ||||| ||||| || | |||||
Sbjct 564 ACTATTGGATTCGAGGTGCAACATTAAGATTGCAGACTTTGGGCTGAGTAATGTTATGCG 623
Query 917 AGATGGTCATTTTTTGAAGACAAGTTGTGGAAGTCCAAATTATGCCGCTCCAGAGGTAAT 976
|||||||||||| | ||||| |||||||||||||| || || || ||||| ||||| ||
Sbjct 624 GGATGGTCATTTTCTAAAGACGAGTTGTGGAAGTCCCAACTACGCTGCTCCTGAGGTTAT 683
Query 977 TTCGGGCAAGTTATATGCTGGCCCTGAAGTAGATGTCTGGAGCTGTGGTGTGATACTCTA 1036
|| || || ||||||||||| |||||||||||||| ||||| || || |||||| | ||
Sbjct 684 ATCAGGTAAATTATATGCTGGACCTGAAGTAGATGTATGGAGTTGCGGAGTGATATTGTA 743
Query 1037 CGCTCT-TCTCTGTGGGACGCTTCCATTTGATGATGAAAACATTCCCAACCTTTTTAAGA 1095
|||||| | | ||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 744 CGCTCTAT-TATGTGGTACTCTTCCATTTGATGATGAAAACATTCCCAACCTTTTCAAGA 802
Query 1096 AGATAAAGGGAGGGATATACACA-TTACCTAGCCATTTATC-TCCTG-GTGCTAGAGATT 1152
| |||||||| ||||| ||||| || ||||| |||||||| || || | ||||||||
Sbjct 803 AAATAAAGGGTGGGATTTACACTCTT-CCTAGTCATTTATCATC-TGAG-GCTAGAGACC 859
Query 1153 TGATCCCCCGGATGCTTGTAGTTGACCCCA-TGAAACG-AGTAACCATCCCTGAGATCCG 1210
||||||| |||||||| |||||||||| | ||||||| | | ||||| |||||||||||
Sbjct 860 TGATCCCAAGGATGCTTATAGTTGACCC-AGTGAAACGGA-TCACCATTCCTGAGATCCG 917
Query 1211 GCAACACCCTTGGTTCCA-AGCTCATCTTCCGAGGTAT-TTAGCTGTTCCTCCTCCAGAT 1268
||||||| ||||||||| | ||||||| || | ||| || |||||| |||| ||||||
Sbjct 918 TCAACACCGTTGGTTCCAGA-CTCATCTCCCTCGTTATCTT-GCTGTTTCTCCACCAGAT 975
Query 1269 ACTGT-GCAACAGGCAAAAAAGATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGG 1327
|| || | | ||||| |||||||| | |||||||| | |||||||| | || |||||
Sbjct 976 ACAGTAG-AGCAGGCTAAAAAGATCAATGAGGAGATAATTCAAGAAGTGGTTAACATGGG 1034
Query 1328 ATTTGACAGAAACCACCTCATCGAATCGCTCCGCAACCGAACCCAGAATGATGGC-ACTG 1386
||||||||||||||| | | ||||| || |||||| ||| || || |||| | ||||
Sbjct 1035 ATTTGACAGAAACCAAGTTTTGGAATCTCTGCGCAACAGAATACAAAACGATG-CTACTG 1093
Query 1387 TGACGTACTATCTGATACTGGACAATCGTTTCCGTGCCTCTA-GTGGTTATCTCGGGGCT 1445
| || ||||| ||| || |||| || || ||||||| || | |||| ||||| | |
Sbjct 1094 TTACATACTACCTGTTATTGGATAACCGGTTCCGTGT-TCCAAGTGGCTATCTAGAATCC 1152
Query 1446 GAGTTTCAAGAGACCATGGA-AGGTACT-CC---CCGTATGCATC-CAGCAGAAAGCGT- 1498
|||||||| ||||| | || || | | || || ||||| | || | ||| |||
Sbjct 1153 GAGTTTCAGGAGACAACAGACAG-TGGTTCCAATCC-TATGCG-CACACCTGAA-GCGGG 1208
Query 1499 TGCTTCACCTGTTAG-CCA-TCGGCTTCCAGGAC-TGATGGAAT-ATCAA-GGAGTTGGC 1553
|||||||||||| || ||| | || |||| | || || |||| | | | | || |||||
Sbjct 1209 TGCTTCACCTGT-AGGCCACTGGG-TTCCTGCACATG-TGGA-TCA-CTACGG-GTTGGG 1262
Query 1554 TTG-A-GATCTCAA-TACCCTGTTGAGAGAAAATGGGCTCTTGGACTTCAGTCTCGGGCT 1610
| | |||| ||| | || ||||| ||||||||||||||||||||||||| | ||
Sbjct 1263 A-GCAAGATCACAAGTGCCA-GTTGACCGAAAATGGGCTCTTGGACTTCAGTCCCATGCG 1320
Query 1611 CATCCCCGTGAAATAATGACGGAAGTCCTGAAAGCCCTGCAAGATTTGAATGTATGTTGG 1670
||||| |||||||| |||| ||||| ||||||| || ||||| | ||||| ||||||
Sbjct 1321 CATCCTCGTGAAATCATGAATGAAGTTTTGAAAGCTCTTCAAGAACTCAATGTGTGTTGG 1380
Query 1671 AAGAAGATAGGGCACTACAACATGAAGTG-CAGATGGGTTCCTAACAGCAGCGCAGATGG 1729
|||||||| || |||||||||||||| || | ||||||||||| | | || |||||
Sbjct 1381 AAGAAGATTGGTCACTACAACATGAAATGTC-GATGGGTTCCTG---GTATTGCTGATGG 1436
Query 1730 T-ATGCTCAGTAACTCGATGCACGATAA-CAACT--ACTTTGGAGACGAGTCCAGCATAA 1785
| | | | || || ||| | | || || || |||| |||| || |||||||| |
Sbjct 1437 TCA-GA--A-TA-CT--ATGGTCAACAATCAGCTGCACTTCAGAGATGAATCCAGCATCA 1489
Query 1786 TAGAGAACGAA-GCAGCTGTTAAGTCGCCCAATGTTGTCAAGTTTGAAATTCAGTTGTAT 1844
| ||| | || | || | | || |||| ||| |||| |||||| ||||| | ||
Sbjct 1490 TTGAGGATGACTGT-GCCATGACTTCACCCACTGTCATCAAATTTGAACTTCAGCTATAC 1548
Query 1845 AAAACTCGGGACGACAAGTATCTA-CTGGATTTGCAGAGAGTACAA-GGTCCTCAGTT-C 1901
||| |||| || || ||||| || || ||| | |||||||| || ||||||||||| |
Sbjct 1549 AAAGCTCGCGAAGAGAAGTA-CTTGCTAGATATCCAGAGAGTT-AACGGTCCTCAGTTTC 1606
Query 1902 TTGTTCTTGGATCTGTGTGCTGCTTTTCTT 1931
| ||||||||||| || || || ||||||
Sbjct 1607 TC-TTCTTGGATCTATGCGCCGCCTTTCTT 1635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83112914590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5