BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01100.1
Length=2561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477418 jgi|Araly1|477418|fgenesh2_kg.3__119__AT3G01100.1 3880 0.0
> Ahg477418 jgi|Araly1|477418|fgenesh2_kg.3__119__AT3G01100.1
Length=2527
Score = 3880 bits (2101), Expect = 0.0
Identities = 2420/2566 (94%), Gaps = 54/2566 (2%)
Strand=Plus/Plus
Query 5 AATGGAAAAATCGAGAAAAATGGTATCGTGTCGCATCGAGGACTTA-TTACG--TATGGC 61
|||||||||||||||||||||||||||||||||| | |||||||| ||| | ||||||
Sbjct 3 AATGGAAAAATCGAGAAAAATGGTATCGTGTCGCTTTAAGGACTTATTTATGTATATGGC 62
Query 62 GAGAGAGCTCAAACCAAAAGATCACCGCCTCGACTGATTCATCTTTTCTCCTGATTCTTG 121
|||||||||||| | ||||||||||||||||||||||| || |||||| |||||||||
Sbjct 63 CAGAGAGCTCAAA-C-GAAGATCACCGCCTCGACTGATTCGTCGTTTCTCTTGATTCTTG 120
Query 122 GCAGGCTTCTCTTGGTCTAAGTGAATTTGGAGTTATGCTTCTGTCAGCACTTTTAACTTC 181
|||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GCAGACTTCTCTTGGTCTAACTGAATTTAGAGTTATGCTTCTGTCAGCACTTTTAACTTC 180
Query 182 AGTGGGAATCAATCTTGGCCTCTGTTTTCTCTTCTTCACTTTGTATTCAATATTGAGAAA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTGGGAATCAATCTTGGCCTCTGTTTTCTCTTCTTCACTTTGTATTCAATATTGAGAAA 240
Query 242 GCAGCCTAGTAATGTCACTGTATACGGTCCACGTCTTGTTAAAAAAGATGGCAAGTCTCA 301
||||||||| ||||||||||||||||||||||| |||||| ||||| ||||| |||||
Sbjct 241 GCAGCCTAGCAATGTCACTGTATACGGTCCACGGCTTGTT---AAAGACGGCAAATCTCA 297
Query 302 GCAGTCAAATGAGTTCAACCTCGAGAGGCTTTTGCCTACTGCTGGTTGGGTCAAAAGAGC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCAGTCAAATGAGTTCAACCTCGAGAGGCTTTTGCCTACTGCTGGTTGGGTCAAAAGAGC 357
Query 362 ATTGGAACCTACCAATGATGAAATCCTCTCCAATCTTGGCTTAGATGCTTTGGTCTTCAT 421
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 ATTGGAACCTACCAATGATGAAATTCTCTCCAATCTTGGCTTAGATGCTTTGGTCTTCAT 417
Query 422 TCGTGTCTTTGTCTTCAGCATAAGAGTGTTTAGCTTTGCATCTGTGGTTGGGATCTTCAT 481
|||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||
Sbjct 418 TCGTGTCTTTGTCTTCAGTATACGAGTGTTTAGCTTTGCTTCTGTGGTTGGGATCTTTAT 477
Query 482 ACTTCTTCCAGTGAATTATATGGGAACAGAGTTTGAAGAGTTTTTCGACCTCCCAAAGAA 541
||||||||| |||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct 478 ACTTCTTCCTGTGAATTATATGGGCACCGAGTTTGAGGAGTTTTTCGACCTGCCAAAGAA 537
Query 542 GTCTATGGATAACTTCAGTATCTCTAATGTTAACGATGGATCAAATAAGCTGTGGATCCA 601
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTCTATGGATAACTTCAGTATTTCTAATGTTAACGATGGATCAAATAAGCTGTGGATCCA 597
Query 602 CTTTTGCGCAATATACATCTTCACGGCGGTTGTTTGTTCTCTACTTTACTATGAGCACAA 661
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 598 CTTTTGCGCAATATACATCTTCACGGCAGTTGTTTGCTCTCTACTTTACTATGAGCACAA 657
Query 662 GTACATTTTAACAAAGCGGATTGCTCATCTTTATTCATCCAAGCCTCAGCCACAAGAATT 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTACATTTTAACAAAGCGGATTGCTCATCTTTATTCATCCAAGCCTCAGCCACAAGAATT 717
Query 722 TACAGTTCTGGTCAGTGGCGTCCCTCTTGTATCCGGGAACAGTATTAGTGAGACAGTAGA 781
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 718 TACAGTTCTGGTCAGTGGCGTCCCTCTTGTATCTGGGAACACTATTAGTGAGACAGTAGA 777
Query 782 AAACTTTTTCAGGGAATATCATTCTTCCTCGTATCTTTCTCATATAGTTGTTCATCGGAC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AAACTTTTTCAGGGAATATCATTCTTCCTCGTATCTTTCTCATATAGTTGTTCATCGGAC 837
Query 842 AGACAAGTTGAAAGTTCTCATGAATGATGCTGAGAAGCTGTACAAGAAGCTTACACGAGT 901
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGACAAGTTAAAAGTTCTCATGAATGATGCTGAGAAGCTGTACAAGAAGCTTACACGAGC 897
Query 902 AAAATCCGGAAGCATATCTCGCCAAAAGTCTAGGTGGGGTGGGTTTCTAGGGATGTTTGG 961
|||||||||||||||||||||||| || |||||| ||| ||||||| |||||||||||||
Sbjct 898 AAAATCCGGAAGCATATCTCGCCAGAATTCTAGGCGGGTTGGGTTTTTAGGGATGTTTGG 957
Query 962 GAATAATGTTGATGTGGTTGACCATTACCAAAAGAAGCTTGATAAGTTAGAAGATGACAT 1021
|||| | | | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 958 GAAT-A-----A--T-GTTGACCATTACCAAAAGAAGCTTGAGAAGTTAGAAGATGACAT 1008
Query 1022 GAGATTGAAACAGTCTTTATTAGCAGGAGAGGAAGTTCCAGCTGCTTTTGTTTCCTTTAG 1081
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1009 GAGATTGAAACAGTCTTTATTAGCAGGAGAGGAAGTTCCAGCGGCTTTTGTTTCCTTTAG 1068
Query 1082 GACAAGACATGGTGCTGCAATAGCAACAAACATTCAGCAAGGAATAGATCCAACACAATG 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GACAAGACATGGTGCTGCAATAGCAACAAACATTCAGCAAGGAATAGATCCAACACAATG 1128
Query 1142 GCTAACTGAGGCAGCCCCGGAGCCCGAAGATGTTCATTGGCCATTTTTCACTGCATCGTT 1201
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1129 GCTAACTGAGGCAGCCCCGGAGCCCAAAGATGTTCATTGGCCATTTTTCACTGCATCGTT 1188
Query 1202 TGTGAGAAGATGGATCTCCAATGTAGTGGTGCTTGTGGCTTTCGTAGCTCTTTTGATCCT 1261
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1189 TGTGAGAAGATGGATCTCCAATGTAGTGGTGCTCGTGGCTTTCGTAGCTCTTTTAATCCT 1248
Query 1262 ATACATTGTCCCCGTTGTATTGGTTCAAGGTCTTGCTAATCTTCACCAGTTGGAGACTTG 1321
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1249 ATACATTGTCCCTGTTGTATTGGTTCAAGGTCTTGCTAATCTTCACCAGTTAGAGACTTG 1308
Query 1322 GTTCCCTTTTCTAAAAGGAATATTAAATATGAAAATCGTGAGTCAAGTGATTACGGGATA 1381
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 GTTCCCTTTTCTAAAAGGCATATTAAATATGAAAATCGTGAGTCAAGTGATTACGGGATA 1368
Query 1382 TCTTCCGAGTCTCATTTTCCAGCTTTTCCTTCTTATAGTACCACCCATTATGCTTCTACT 1441
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1369 TCTTCCGAGTCTAATTTTCCAGCTTTTCCTTCTTATAGTACCACCTATTATGCTTCTACT 1428
Query 1442 TTCCTCAATGCAAGGATTCATTTCTCATAGCCAGATTGAGAAATCTGCATGTATCAAGCT 1501
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1429 TTCCTCAATGCAAGGATTCATTTCTCATAGCCAGATCGAGAAATCGGCATGTATCAAGCT 1488
Query 1502 TCTAATCTTTACTGTATGGAACAGTTTCTTTGCAAATGTACTGTCCGGATCTGCCCTTTA 1561
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1489 TCTAATCTTTACCGTATGGAACAGTTTCTTTGCAAATGTACTGTCCGGATCTGCTCTTTA 1548
Query 1562 TCGTGTTAATGTGTTCCTTGAACCTAAGACTATTCCTCGTGTGCTTGCTGCAGCTGTGCC 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 TCGTGTTAATGTGTTCCTTGAACCTAAGACTATTCCTCGTGTGCTTGCTGCAGCTGTGCC 1608
Query 1622 AGCACAGGCATCGTTCTTTGTATCTTATGTTGTGACCTCTGGATGGACTGGTTTATCATC 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 AGCACAGGCATCGTTCTTTGTATCTTATGTTGTGACCTCTGGATGGACTGGTTTATCATC 1668
Query 1682 AGAGATCCTCCGTTTGGTTCCTCTTCTTTGGAGTTTCATAACGAAACTTTTCGGCAAGGA 1741
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1669 AGAGATCCTCCGTTTGGTTCCTCTTCTTTGGAGTTTTATAACAAAACTTTTCGGCAAGGA 1728
Query 1742 AGATGACAAAGAATTTGAGGTTCCTTCAACTCCTTTCTGCCAAGAAATCCCAA-GGATTC 1800
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 1729 AGATGACAAAGAATTTGAGGTTCCTCCAACTCCTTTCTGCCAAGAAATCCCAAAGG-TTC 1787
Query 1801 TATTTTTTGGACTCCTCGGTATAACTTACTTCTTCCTTTCGCCATTGATACTGCCTTTCT 1860
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1788 TATTTTTTGGACTTCTCGGTATAACTTACTTCTTCCTTTCGCCATTGATACTGCCGTTCT 1847
Query 1861 TGTTGGTCTACTATTGTCTTGGATATATCATCTACCGCAACCAGCTCCTAAACGTATATG 1920
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1848 TGTTGGTCTACTATTGTCTTGGATATGTCATCTACCGCAACCAGCTCCTAAACGTATATG 1907
Query 1921 CGGCCAAGTATGAAACTGGTGGAAAGTTTTGGCCAATAGTTCACAGCTATACTATCTTCT 1980
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1908 CGGCCAAGTATGAAACTGGTGGAAAGTTTTGGCCAATAGTACACAGCTACACTATCTTCT 1967
Query 1981 CTTTGGTACTAATGCACATTATTGCAGTCGGATTATTCGGGCTTAAAGAGCTTCCAGTGG 2040
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1968 CTTTGGTACTAATGCACATTATTGCAGTCGGATTATTTGGGCTTAAAAAGCTTCCAGTGG 2027
Query 2041 CATCTTCTTTAACAATTCCCCTTCCGGTTCTCACGGTCCTTTTCAGCATTTACTGCCAAA 2100
|||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 2028 CATCTTCTTTAACAATTCCCCTTCCGATTCTGACCGTCCTTTTCAGCATTTACTGCCAAA 2087
Query 2101 GACGGTTTTTACCAAATTTCAAATCTTATCCTACCCAGTGTCTGGTAAACAAAGATAAAG 2160
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 2088 GACGGTTTTTACCAAATTTCAAATCTTATCCTACCCAGTGCCTAGTAAACAAAGACAAAG 2147
Query 2161 CAGACGAGAGAGAGCAAAACATGTCTGAATTCTATTCGGAACTCGTTGTTGCTTACCGAG 2220
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2148 CAGACGAGAGAGAGCAAAACATGTCTGAATTCTATTCGGAACTGGTTGTTGCTTACCGAG 2207
Query 2221 ATCCTGCACTTTCGGCATCACAGGACTCGA-GAGATATCTCACCTTGAGATCACCTTTTT 2279
||||||||||| ||||||||||| |||| | |||| |||||||||| |||||||||||||
Sbjct 2208 ATCCTGCACTTCCGGCATCACAGAACTC-ACGAGACATCTCACCTTAAGATCACCTTTTT 2266
Query 2280 ACTTGAGCTATTGAAGTTTGCTTATGTTGA---A-GCTGTTGG-TTTACTATACCTGGTG 2334
||||||||| |||||||||||||||||||| | || ||| | |||||||||||||||
Sbjct 2267 ACTTGAGCTTTTGAAGTTTGCTTATGTTGATTGAAGCGGTTAGCTTTACTATACCTGGTT 2326
Query 2335 CAATCCATGAAAGAACACACTAAACCGGTTGTCTTGTACATTGGGTCTTAACCGAGAATC 2394
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 CAATACATGAAAGAACACACTAAACCGGTTGTCTTGTACATTGGGTCTTAACCGAGAATC 2386
Query 2395 AAGCGGTTTTTGT-CTTGTACATTTGCTTACACTTGGCTTGTGTaaaaaagaaaaaaaGT 2453
|| |||||||||| ||||| | | | | ||||||| ||| | ||
Sbjct 2387 AACCGGTTTTTGTGCTTGT------G-TAA-A------------AAAAAAGGAAAGA-GT 2425
Query 2454 TTATGTCAATGTATCTCTCTAAACCGGTTTAAGACGGTACAAACTTTTTGAAAGATGCCA 2513
|||||||| ||| | ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 2426 TTATGTCAGTGT-T-TCTCTAAACCGGTTTAAGACGGTACAAACCTTTTGAAAGTTGCCA 2483
Query 2514 AAACAAAACGG--TGGTTAATAATTTTACCACAGAGAATATTTAGC 2557
|||||||||| || || | || | | ||||||||||||||||
Sbjct 2484 AAACAAAACGTAATGATTTA-AAGTAAAA-ACAGAGAATATTTAGC 2527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96558771075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5