BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01130.1 Length=659 Score E Sequences producing significant alignments: (Bits) Value Ahg930821 jgi|Araly1|930821|scaffold_303278.1 139 2e-32 Ahg923072 jgi|Araly1|923072|scaffold_104353.1 139 2e-32 > Ahg930821 jgi|Araly1|930821|scaffold_303278.1 Length=422 Score = 139 bits (75), Expect = 2e-32 Identities = 90/97 (93%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 87 CTTTACTCCGGTACCAGCACTCTTGCTCTGGTTGCTCGTGCTTCGGCTTTCGGGTTGGGT 146 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 211 CTTTACTCCGGCACCAGCACTCTTGCTCTGGTTGCTCGTGCTTCGGCTTTTGGGTTGGTT 270 Query 147 CTCATCTA-CGGCAACATCAAGCTCAAGGCTTTAAAG 182 || ||||| || ||||||||||||||||||||| ||| Sbjct 271 CTTATCTATCG-CAACATCAAGCTCAAGGCTTTGAAG 306 > Ahg923072 jgi|Araly1|923072|scaffold_104353.1 Length=413 Score = 139 bits (75), Expect = 2e-32 Identities = 90/97 (93%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 87 CTTTACTCCGGTACCAGCACTCTTGCTCTGGTTGCTCGTGCTTCGGCTTTCGGGTTGGGT 146 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 211 CTTTACTCCGGCACCAGCACTCTTGCTCTGGTTGCTCGTGCTTCGGCTTTTGGGTTGGTT 270 Query 147 CTCATCTA-CGGCAACATCAAGCTCAAGGCTTTAAAG 182 || ||||| || ||||||||||||||||||||| ||| Sbjct 271 CTTATCTATCG-CAACATCAAGCTCAAGGCTTTGAAG 306 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24169929378 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5