BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01130.1
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930821 jgi|Araly1|930821|scaffold_303278.1 139 2e-32
Ahg923072 jgi|Araly1|923072|scaffold_104353.1 139 2e-32
> Ahg930821 jgi|Araly1|930821|scaffold_303278.1
Length=422
Score = 139 bits (75), Expect = 2e-32
Identities = 90/97 (93%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 87 CTTTACTCCGGTACCAGCACTCTTGCTCTGGTTGCTCGTGCTTCGGCTTTCGGGTTGGGT 146
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 211 CTTTACTCCGGCACCAGCACTCTTGCTCTGGTTGCTCGTGCTTCGGCTTTTGGGTTGGTT 270
Query 147 CTCATCTA-CGGCAACATCAAGCTCAAGGCTTTAAAG 182
|| ||||| || ||||||||||||||||||||| |||
Sbjct 271 CTTATCTATCG-CAACATCAAGCTCAAGGCTTTGAAG 306
> Ahg923072 jgi|Araly1|923072|scaffold_104353.1
Length=413
Score = 139 bits (75), Expect = 2e-32
Identities = 90/97 (93%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 87 CTTTACTCCGGTACCAGCACTCTTGCTCTGGTTGCTCGTGCTTCGGCTTTCGGGTTGGGT 146
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 211 CTTTACTCCGGCACCAGCACTCTTGCTCTGGTTGCTCGTGCTTCGGCTTTTGGGTTGGTT 270
Query 147 CTCATCTA-CGGCAACATCAAGCTCAAGGCTTTAAAG 182
|| ||||| || ||||||||||||||||||||| |||
Sbjct 271 CTTATCTATCG-CAACATCAAGCTCAAGGCTTTGAAG 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24169929378
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5