BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01140.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477416 jgi|Araly1|477416|fgenesh2_kg.3__117__AT3G01140.1 1919 0.0
Ahg488379 jgi|Araly1|488379|fgenesh2_kg.6__1513__AT5G15310.1 556 1e-157
Ahg950898 jgi|Araly1|950898|scaffold_802785.1 139 5e-32
> Ahg477416 jgi|Araly1|477416|fgenesh2_kg.3__117__AT3G01140.1
Length=1412
Score = 1919 bits (1039), Expect = 0.0
Identities = 1313/1436 (91%), Gaps = 55/1436 (4%)
Strand=Plus/Plus
Query 7 GAAATTCACTGTTTTACTTTTGTGTTGAGAGGTACAATTTCAAGGTAAAGATGGCTACAG 66
||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1 GAAATTCACTGTTTTAC-CTTGTGTTGAGAGATACAACTTCAAGGTAAAGATGGCTACTG 59
Query 67 TAATTGGGTGCTCTGTTGAGTCTTTAAAAGGAAATCAAGGTGTTGGAGCCACAAAGGTAA 126
| || |||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 60 T--TTTGGTG---TGTTGAGTCTTTAAAAGGAAATCAAGGTGTTGGAACCACAAAGGTAA 114
Query 127 TAATATCTCTCGACCCCATCCAATTGAATGCCAATCCATGTCAGAGACCGGGAAAAGGGG 186
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 115 TAATATCCCTCGACCCCATCTTATTGAATGCCAATCCATGTCAGAGACCGGGAAAAGGGG 174
Query 187 CGCTTACAGAACCTAAACAGAGACATCTTCTGTTGTGTTTCTCCATCTATATATCAGAGT 246
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 175 CGCTTACAGAACCTAAACAGAGACATCTTCTATTGTGTTTCTCCCTCTATATATCAGAGT 234
Query 247 GACGCCAAGAGAGCAGCTTTTGTGATCATACTGATC---AT---GATCATATCGCCATGT 300
|||||||||||||||||||||||||| ||||||||| || |||||||||||| |||
Sbjct 235 GACGCCAAGAGAGCAGCTTTTGTGATTATACTGATCATGATCAGGATCATATCGCCGTGT 294
Query 301 TGTGATAAGGCCGGGTTGAAGAAAGGGCCTTGGACTCCAGAAGAGGATCAGAAACTTTTG 360
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 295 TGTGATAAGGCCGAGTTGAAGAAAGGGCCTTGGACACCAGAAGAGGATCAGAAACTTTTG 354
Query 361 GCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTTCTTTGCCTGAGAAAGCCGGTCTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTTCTTTGCCTGAGAAAGCCGGTCTC 414
Query 421 CAAAGGTGTGGAAAGAGTTGCAGACTCAGATGGACTAACTACCTAAGACCTGACATCAAG 480
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CAAAGATGCGGAAAGAGTTGCAGACTCAGATGGACTAACTACCTAAGACCTGACATCAAG 474
Query 481 AGAGGCAAATTCACTGTACAAGAAGAACAAACCATCATTCAACTCCACGCTCTCCTCGGA 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 475 AGAGGCAAATTCACTGTACAAGAAGAACAAACCATCATTCAACTCCATGCTCTCCTCGGA 534
Query 541 AACAGGTGGTCAGCGATTGCAACTCATTTACC-AAAGAGGACAGACAACGAGATCAAGAA 599
|||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||
Sbjct 535 AACAGGTGGTCAGCAATTGCAACTCACTTACCCAAA-AGGACAGACAACGAGATCAAGAA 593
Query 600 CTACTGGAACACACACTTGAAGAAACGTCTGATCAAAATGGGGATAGATCCAGTGACTCA 659
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 594 CTACTGGAACACACACTTGAAGAAACGTCTGGTCAAAATGGGGATAGATCCAGTGACCCA 653
Query 660 CAAGCACAAAAACGAGACTCTTTCGTCTTCCACAGGACAATCAAAGAACGCAGCCACGCT 719
|||| ||||||||||||| ||||||||| ||||||| || || |||||||||||||||||
Sbjct 654 CAAGAACAAAAACGAGACACTTTCGTCTACCACAGGTCAGTCCAAGAACGCAGCCACGCT 713
Query 720 TAGTCATATGGCTCAATGGGAGAGTGCAAGACTCGAAGCTGAAGCAAGGCTAGCTAGAGA 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 714 TAGTCATATGGCTCAATGGGAGAGTGCTAGACTCGAAGCTGAAGCAAGGCTAGCTAGAGA 773
Query 780 ATCAAAGCTTCTCCATTTACAGCATTACCAAAACAATAACAACCTTAACAAATCAGCAGC 839
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 774 ATCAAAGCTTCTCCATTTACAGCATTACCAAAACAATAAC--C-TTAACAAATCAGC--- 827
Query 840 TCCTCAACAACATTGCTTCACTCAAAAAACATCAACAAACTGGACTAAACCAAACCAAGG 899
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 828 TCCTCAACAACATTGCTTCACTCATAAAACATCAACAAATTGGACTAAACCAAACGAAGG 887
Query 900 AAACGGAGACCAACAGCTTGAATCTCCGACATCGACGGTGACATTCTCTGAGAATCTTCT 959
||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 888 AAACGGAGATCAACAGCTTGAATCTCCGACATCGACGATGACATTCTCCGAGAATCTTCT 947
Query 960 GATGCCTTTAGGAATCCCTACGGATAGCAGCAGAAATAGAAACAAT-AA-CAACAATGAG 1017
||||||||||||||||| ||||||||||| | || |||||| ||| || | || ||||
Sbjct 948 CATGCCTTTAGGAATCCCGACGGATAGCAG-A-AA-TAGAAATAATGAATCCAC--TGAG 1002
Query 1018 -TCCTCGGCGATGATTGAATTGGCCGTATCTTCGTCAACCTCCTCCGATGTGAGTCTGGT 1076
| | |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 1003 ATTC-CGGCGATGATTGAATTCGCCGTCTCTTCCTCAACCTCCTCCGATGTGAGTCTGGT 1061
Query 1077 CAAAGAACATGAACACGACTGGATTAGGCAGATCAACTGTGGTAGTGGA-GGAATAGGAG 1135
|||||| || |||||||||||||||||||| ||||||||| | ||| ||||||||||
Sbjct 1062 CAAAGAGCACGAACACGACTGGATTAGGCAAATCAACTGTCCAAC-GGAAGGAATAGGAG 1120
Query 1136 AAGGATTCACGAGTCTAT-TGATCGGTGATTCGGTCGGCCGGGGTTTACCCACCGGGAAA 1194
||||||||||||| || | || |||||||||| ||||||||| | ||||||||||| |||
Sbjct 1121 AAGGATTCACGAGCCT-TCTGCTCGGTGATTCAGTCGGCCGGAGATTACCCACCGGAAAA 1179
Query 1195 AACGAAGCGAC-G--GC-GG-GC-GT-G-GG-GAATGAGAGTGAGTATAACTACTATGAG 1245
|||||| |||| | || || || | | || ||| ||||||||||||||||||||||||
Sbjct 1180 AACGAAACGACCGTTGCCGGAGCCGGCGTGGTGAACGAGAGTGAGTATAACTACTATGAG 1239
Query 1246 GATAACAAGAATTACTGGAATAGCATTCTCAACTTGGTTGATTCTTCACCGTCCGATTCC 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 GATAACAAGAATTACTGGAATAGCATTCTCAACTTGGTTGATTCTTCACCGTCCGATTCC 1299
Query 1306 GCGACGATGTTCTGATCTAAGGGTCT-TCA--A---C-C-AAACATTTTTAATTCTCAGA 1357
|| ||||||||||||||||||||||| | | | | | |||||||||| ||||
Sbjct 1300 GCCACGATGTTCTGATCTAAGGGTCTATAATTATTTCTCCAAACATTTTTTTTTCTTT-- 1357
Query 1358 TTGTTTTTTAA--ATGTCGATAGCTTTCCAatactttttacttatctttattttct 1411
|| |||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1358 TTCTTTTTTTGGTATGTCGATAGCTTTCCAATACTTTT-ACTTATCTTTATTTTCT 1412
> Ahg488379 jgi|Araly1|488379|fgenesh2_kg.6__1513__AT5G15310.1
Length=1310
Score = 556 bits (301), Expect = 1e-157
Identities = 543/654 (83%), Gaps = 39/654 (6%)
Strand=Plus/Plus
Query 313 GGG-TTGAAGAAAGGGCCTTGGACTCCAGAAGAGGATCAGAAACTTTTGGCTTATATTGA 371
||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 252 GGGTTTGAAGAAAGGACCTTGGACACCAGAAGAGGATCAGAAACTTTTAGCTTATATTGA 311
Query 372 AGAACATGGCCATGGAAGCTGGCGTTCTTTGCCTGAGAAAGCCGGTCTCCAAAGGTG-TG 430
||| ||||| |||||||| |||||||| |||||||||||||| ||||| || | || |
Sbjct 312 AGAGCATGGTCATGGAAGTTGGCGTTCATTGCCTGAGAAAGCTGGTCTTCATCGATGCGG 371
Query 431 GAAAGAGTTGCAGACTCAGATGGACTAACTACCTAAGACCTGACATCAAGAGAGGCAAAT 490
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 372 GAAA-AGTTGCAGACTAAGATGGACTAACTACCTAAGACCTGACATCAAAAGAGGCAAAT 430
Query 491 TC-ACTGTACAAGAAGAACAAACCATCATTCAACTCCACGCTCTCCTCGGAAACAGGTGG 549
|| ||| | |||||||||||||| || || |||||||| ||||| | |||||||| |||
Sbjct 431 TCAACT-TGCAAGAAGAACAAACTATTATCCAACTCCATGCTCTGTTAGGAAACAGATGG 489
Query 550 TCAGCGATTGCAACTCATTTACCAAAGAGGACAGACAACGAGATCAAGAACTACTGGAAC 609
||||||||||| |||||||| || ||||| ||||||||||| ||||||||||| ||||||
Sbjct 490 TCAGCGATTGCTACTCATTTGCCTAAGAGAACAGACAACGAAATCAAGAACTATTGGAAC 549
Query 610 ACACACTTGAAGAAAC-GTCTGA-TCAAAATGGGGATAGATCCAGTGACTCACAAGCACA 667
|| || |||||||||| || | | | ||||||||||| |||||||||||||| || | ||
Sbjct 550 ACTCATTTGAAGAAACGGT-T-AGTGAAAATGGGGATTGATCCAGTGACTCATAAACCCA 607
Query 668 AAAACGAGACT-CTTTCGTCTTCCAC-AGGACAATCAAAGAACGCAGCCACGCTTAGTCA 725
||||||||||| |||| |||| | | || | ||| ||||||||||| | ||||| ||
Sbjct 608 AAAACGAGACTCCTTT-ATCTT-CTCTTGGTCTATCCAAGAACGCAGCTATACTTAGCCA 665
Query 726 TA-TGGCTCAATGGGAGAGTGCAAGACTCGAAGCTGAAGCAAGGCTAGCTAGAGAATCAA 784
| | ||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 666 CACT-GCTCAATGGGAAAGTGCAAGGCTTGAAGCTGAAGCAAGGCTAGCTAGAGAATCAA 724
Query 785 AGCTTCTCCATTTACAGCATTACCAAAACAATAACAACCTTAACAAATCAGCAGCTCCTC 844
||||||| |||||||| |||||||||| ||| |||| | || || || || ||
Sbjct 725 AGCTTCTTCATTTACAACATTACCAAACCAA-AACA---T---CA--TCT-CA--TCATC 772
Query 845 AACAACATTGCTTCACTCAAAAAACAT--CAACA-AACTGGACTAAACCAAACCAAG-GA 900
| || ||| | |||||||| || ||| | || || ||||| || | ||||||| ||
Sbjct 773 ATCATCATGGATTCACTCACAAGTCATTGCTACCCAATTGGAC-AA-CAAAACCAAACGA 830
Query 901 A-A-CGGAGACCAACAGCTTGAATCTCCGACATCGACGGTGACATTCTCTGAGA 952
| | | | || |||| ||||||||||||||||| || ||| ||||||||||||
Sbjct 831 AGATC--A-AC-AACAACTTGAATCTCCGACATCTACAGTGTCATTCTCTGAGA 880
> Ahg950898 jgi|Araly1|950898|scaffold_802785.1
Length=1156
Score = 139 bits (75), Expect = 5e-32
Identities = 194/249 (78%), Gaps = 18/249 (7%)
Strand=Plus/Plus
Query 425 GGTGTGGAAAGAGTTGCAGACT-CAGATGGACTAACTACC-TAAGACCTGACATCAAGAG 482
|||||||||||||||| ||||| | ||||||| || |||| ||| |||||| ||||| ||
Sbjct 166 GGTGTGGAAAGAGTTGTAGACTGC-GATGGACCAATTACCTTAA-ACCTGAGATCAAAAG 223
Query 483 AGGCAAATTCACTGTACA-A-GAAGAACAAACCATCATTCA-ACTCCACGC-TCTCCTCG 538
|||| | || | || || | ||||| || | |||| ||| || || || |||| | |
Sbjct 224 AGGCGAGTTTA--GTTCAGAGGAAGAGCAGATTATCA-TCATGCTTCATGCTTCTCGT-G 279
Query 539 GAAACAGGTGGTCAGCGATTGCAACTCATTTACCAAAG-AGGACAGACAACGAGATCAAG 597
| |||| |||||| | || || | |||||||| || || ||||||||||||||||||
Sbjct 280 GCAACAAGTGGTCGGTAATAGCGAGACATTTACC-TAGAAGAACAGACAACGAGATCAAG 338
Query 598 AACTACTGGAACACACA-CTTGAAGAAACGTCTGATCAAA-ATGGGGATAGATCCAGTGA 655
|||||||||||||| || || || |||||| ||||| || | ||| | ||||| ||||
Sbjct 339 AACTACTGGAACACGCATCTCAAA-AAACGTTTGATCGAACA-GGGTCTTGATCCCGTGA 396
Query 656 CTCACAAGC 664
|||||||||
Sbjct 397 CTCACAAGC 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5