BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01150.1
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927661 jgi|Araly1|927661|scaffold_300118.1 1962 0.0
> Ahg927661 jgi|Araly1|927661|scaffold_300118.1
Length=1238
Score = 1962 bits (1062), Expect = 0.0
Identities = 1159/1205 (96%), Gaps = 9/1205 (1%)
Strand=Plus/Plus
Query 149 GATGTCGAGCTCAGGCCAAACTCAGTTCCGTTATACACAGACGCCGTCGAAGGTGGTTCA 208
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 21 GATGTCGAGCTCAGGCCAAACGCAGTTCCGTTATACGCAGACGCCGTCGAAGGTGGTGCA 80
Query 209 TCTGCGGAATCTTCCATGGGAATGCGTCGAAGAGGAGCTCATCGACCTTTGCAAACGATT 268
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 81 TCTGCGGAATCTTCCCTGGGAATGCGTCGAAGAGGAGCTCATCGACCTTTGTAAACGATT 140
Query 269 CGGCAAGATCGTCAATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCTTTCGTCGA 328
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 141 CGGCAAGATCGTCAATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCCTTCGTCGA 200
Query 329 ATTTGCTGACTTGAATCAAGCTATATCAATGGTTTCGTATTATGCTTCATCTTCAGAGCC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 ATTTGCTGACTTGAATCAAGCTATATCAATGGTTTCGTATTATGCTTCATCTTCAGAGCC 260
Query 389 CGCACAGATTCGTGGG-AAAACTGTCTATATTCAGTACTCTAATCGCCATGAGATTGTTA 447
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 261 CGCACAGATTCG-GGGCAAAACTGTCTATATTCAGTACTCTAATCGCCATGAAATTGTTA 319
Query 448 ACAATCAGAGTCCTGGAGATGTCCCTGGAAATGTCCTCTTGGTTACCTTTGAAGGAGTGG 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ACAATCAGAGTCCTGGAGATGTCCCTGGAAATGTCCTCTTGGTTACCTTTGAAGGAGTGG 379
Query 508 AATCTCACGAAGTCAGCATCGATGTTATCCATCTGGTATTTTCTGCTTTTGGATTTGTGC 567
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AATCTCATGAAGTCAGCATCGATGTTATCCATCTGGTATTTTCTGCTTTTGGATTTGTGC 439
Query 568 ATAAAATTGCCACATTTGAGAAAGCTGCTGGTTTCCAGGCACTAGTTCAATTTACTGATG 627
| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 440 ACAAAATTGCCACTTTTGAGAAAGCTGCTGGTTTCCAGGCACTAGTTCAATTTAGTGATG 499
Query 628 TGGAGACTGCATCCGCGGCAAGGAGTGCGTTGGATGGCAGAAGTATACCCAGGTATCTGC 687
||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |||
Sbjct 500 TGGAGACTGCATCTGCGGCAAGGAATGCGTTGGATGGCAGAAGTATACCCAGATATTTGC 559
Query 688 TTTCC-GCACATGTTGGTTCGTGCAGTTTGCGAATGTCTTATTCAGCTCATACTGATCTC 746
|||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 560 -TTCCAGAACATGTTGGTTCGTGCAATTTGCGAATGTCTTATTCAGCTCATACTGATCTC 618
Query 747 AACATCAAGTTTCAGTCCCACCGGAGCAGAGATTACACAAATCCATACCTTCCAGTGAAT 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 AACATCAAGTTTCAGTCCCACCGGAGCAGAGATTACACAAATCCATACCTTCCAGTGAAT 678
Query 807 CAGACCGCAATGGATGGGTCTATGCAGCCTGCTTTAGGTGCTGACGGCAAGAAAGTTGAA 866
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 679 CACACCGCAATGGACGGGTCTATGCAGCCTGCCTTAGGTGCTGACGGCAAGAAAGTTGAA 738
Query 867 TCTCAGAGCAACGTCCTTCTCGGTTTGATTGAGAATATGCAGTATGCTGTCACTGTGGAT 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TCTCAGAGCAACGTCCTTCTCGGTTTGATTGAGAATATGCAGTATGCTGTCACTGTGGAT 798
Query 927 GTTCTTCACACGGTGTTTTCTGCATATGGAACTGTCCAGAAGATTGCTATATTTGAGAAG 986
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GTTCTTCAAACGGTGTTTTCTGCATATGGAACTGTCCAGAAGATTGCTATATTTGAGAAG 858
Query 987 AATGGTTCAACGCAAGCATTAATTCAATACTCTGATATACCAACAGCAGCAATGGCCAAA 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 859 AATGGTTCAACGCAAGCATTAATTCAATACTCTGATATACCAACAGCAGCAATAGCCAAA 918
Query 1047 GAAGCACTGGAAGGACACTGCATTTATGACGGTGGCTACTGTAAGCTTCGACTATCATAC 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GAAGCACTGGAAGGACACTGCATTTATGACGGTGGCTACTGTAAGCTTCGACTATCATAC 978
Query 1107 TCTCGTCATACTGATCTGAATGTTAAGGCTTTTAGCGACAAAAGCAGAGACTATACACTT 1166
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 979 TCTCGTCATACTGATCTCAATGTTAAGGCGTTTAGCGACAAAAGCAGAGACTATACACTC 1038
Query 1167 CCTGATCTAAGCCTACTTGTGGCACAAAAAGGTCCCGCG-GTGTCGGGTTCTGCACCACC 1225
|| |||||||||||||||| |||| || ||||||| | ||||||| |||||| |||||
Sbjct 1039 CCCGATCTAAGCCTACTTG---CACAGAAGGGTCCCG-GAGTGTCGGCTTCTGCTCCACC 1094
Query 1226 AGCAGGTTGGCAGAACCCGCAAGCGCAAAGTCAATACTCAGGTTATGGCGGAAGCCCATA 1285
| ||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 1095 AACAGGTTGGCAGAACCCGCAAGTGCAAACTCAATACTCAGGTTATGGTGGAAGCCCATA 1154
Query 1286 TATGTACCCATCATCTGATCCCAACGGGGCTTCACCCTCAGGTCAACCTCCTTACTATGG 1345
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1155 TATGTACCCATCATCTGATCCCAATGGGGCTTCACCCTCAGGTCATCCTCCTTACTATGG 1214
Query 1346 ATGAG 1350
||||
Sbjct 1215 TTGAG 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56564013825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5