BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01160.1
Length=2269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317076 jgi|Araly1|317076|fgenesh1_pm.C_scaffold_3000092 3022 0.0
> Ahg317076 jgi|Araly1|317076|fgenesh1_pm.C_scaffold_3000092
Length=2178
Score = 3022 bits (1636), Expect = 0.0
Identities = 2015/2189 (92%), Gaps = 62/2189 (3%)
Strand=Plus/Plus
Query 14 ATGGGTTCAAAGAATAAGAAGCAAAGGAAAGGAGAGAGCATTGAAGAAGCTAAAGGATCC 73
|||||||| ||||| ||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1 ATGGGTTCGAAGAACAAGAAGCAAAGGAAAGGAGAGAGCA---ATGAAGCTAAAGGATCC 57
Query 74 AGTGGAGTCGCAGAGGAAGGAAACGAAATGATTAAGGATCCAAGGTTTTCGTCGGCGCAC 133
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GGTGGAGTCGCAGACGAAGGAAACGAAATGATTAAGGATCCAAGGTTTTCGTCGGCGCAC 117
Query 134 ACGGACCCTAAATTCCGTAGGATGCGGAGGCGTGACTCCAAAGTCGCCATTGACTC-CAG 192
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||| || | |
Sbjct 118 ACTGACCCTAAATTCCGTAGGATTCGGAGGCGTGACTCCAAAGTCGCGATTGATTCTC-G 176
Query 193 ATTCCAGCCT-ATGTTCAATGATAAGCGATTTGCCACTGGTTCTGCTCCTGTCGATAAGC 251
||||||| || ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 177 ATTCCAG-CTGATGTTCAATGATAAGCGATTTGCTAATGGTTCTGCTCCTGTCGATAAGC 235
Query 252 GTGGCAAGCGTAGAACAGGAGGCACTGGCAAAGATTCGCTTCGAGAGTTTTATCGAA--- 308
|||||||||| |||| |||||||| |||||| | ||| |||||||||||||||||||
Sbjct 236 GTGGCAAGCGGAGAAGAGGAGGCAGTGGCAAGGGTTCTCTTCGAGAGTTTTATCGAATTG 295
Query 309 T---TGAAGAT--GAAG--GTAAGCAGAAAACTGAGGAGGAATCTGGGGATGAGAGCGGG 361
| ||||||| |||| | ||| |||||||||| |||||||||||||||||||||| |
Sbjct 296 TAGATGAAGATGAGAAGAAG-AAGAAGAAAACTGACGAGGAATCTGGGGATGAGAGCGAG 354
Query 362 AGTGAGACAGAGATAAATGATTTGAAATCCGAAAAATCTAGCCATGTAGAATCTGAGGAA 421
||||||| | |||| | |||| |||||||||||||||||||| |||||||||| | | |
Sbjct 355 AGTGAGAAACAGATGATTGATCTGAAATCCGAAAAATCTAGCGATGTAGAATC--A-G-A 410
Query 422 GAGAGTGAGAGTGAGCTAAAGGTTGCTTCTTTGGATGATG-A-A-TCTGATGAGAAAGCA 478
| || |||||||||||||||||||||||||||||||| | | | ||||| |||||||||
Sbjct 411 G-GA-AGAGAGTGAGCTAAAGGTTGCTTCTTTGGATGAGGAAGACTCTGACGAGAAAGCA 468
Query 479 GACTCT------GAAG-AG--T-T----A--TCCTCGC---AGGAGGAGGAAGAAGAAGA 519
|||||| |||| || | | | | |||| |||||||||||||||||||
Sbjct 469 GACTCTGACGAGGAAGCAGACTCTGAAGAGGT-ATCGCAGGAGGAGGAGGAAGAAGAAGA 527
Query 520 GGATGATACAGATGAGGACGATGAAGCTATGTATGAAGATGAGGGACCAGAAATTCCGGA 579
|||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| ||
Sbjct 528 GGATGATACAGATGAGGACGATGAAGCTATCTATGAAGACGAGGCACCAGAAATTCCTGA 587
Query 580 AGAGAACATACCGCTTATCCAAGAAGAAACTCATAGACTGGCTATCGTTAACATGGATTG 639
||||||||| ||| |||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 588 AGAGAACATTCCGTTTATCCCAGAAGAAACTCACAGACTGGCTATCGTTAACATGGATTG 647
Query 640 GAGACATGTCTCTGCTAAAGACTTGTACGTAGTGTTGAATTCGTTTCTGCCAAAAGATGG 699
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 648 GAGACATGTCTCTGCTAAAGACTTGTACGTAGTTTTGAATTCGTTTCTGCCAAAAGATGG 707
Query 700 GCGCATTTTGTCAGTTGCGGTCTATCCATCTGAGTTCGGACTTGAGCGAATGAAAGAGGA 759
||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||
Sbjct 708 GCGCATTTTGTCAGTGGCAGTCTATCCATCTGAATTTGGACTTGAGCGAATGAAAGAGGA 767
Query 760 GGAAATCCATGGGCCGGTAATTGATGGCGACAAAAAGAATGACGCTAGTGATGATGAAGA 819
||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 768 GGAAATCCATGGGCCGGTAATTGATGGTGACAAAAAGAATGAAGGTAGTGATGATGAAGA 827
Query 820 TGAAGAAGAGGAGGAAGATGAGGATGTCATCAACCAGAAGCTACGTGCCTATGAAATAAG 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TGAAGAAGAGGAGGAAGATGAGGATGTCATCAACCAGAAGCTACGTGCCTATGAAATAAG 887
Query 880 TAGATTAAAGTATTATTTCGCTGTTGCCGAATGTGATTCAAGTGCTACTGCAGATTACTT 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 888 TAGATTAAAGTATTATTTCGCTGTTGCCGAATGTGATTCAAGTGCTACTGCAGATCACTT 947
Query 940 GTACAAATCATGTGATGGAATTGAGTTTGAGAGATCATCAAACAAGCTCGACCTAAGATT 999
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 948 GTACAAATCATGTGATGGAATTGAGTTTGAGAGATCCTCAAACAAGCTAGACCTAAGATT 1007
Query 1000 TATTCCGGATTCCATGGAATTCAAACATCCACCTCGTGATATTGCATCTGAGGCACCAGC 1059
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1008 TATTCCCGATTCCATGGAATTCAAACATCCACCTCGGGATATTGCATCTGAGGCACCTGC 1067
Query 1060 TGGTTATGAAGGTTTAGATTTTCAGAGCCGAGCTCTGCAGATGAGCAAAGTTAATCTTTC 1119
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1068 TGGTTATGAAGGTTTAGATTTTCAGAGCCGAGCACTGCAGTTGAGCAAAGTTAATCTTTC 1127
Query 1120 TTGGGATGAAGATGAACCGCACCGGATTAAGACCTTAAATCAGAAATTCAATCCTGAACA 1179
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1128 TTGGGATGAAGATGAACCACACCGCATTAAGACCTTAAATCAGAAATTCAACCCTGAACA 1187
Query 1180 GTTGGCAAATCTTGAGATGAAGGAGTTTTTAGCTTCTGATGAGAGTGATTCTGATGAGGA 1239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1188 GTTGGCAAATCTTGAGATGAAGGAGTTTTTAGCTTCTGGTGAGAGTGATTCTGATGACGA 1247
Query 1240 AGACGACTTGGGCAATGAAGTTATTAACCAGAGTaaaa-aaa--aGGACAAGAAGAAAGA 1296
||||||| |||||||| ||||||||||||||||| ||| |||| |||| ||||||
Sbjct 1248 AGACGACGACATCAATGAAGATATTAACCAGAGTAAAAGAAAGGAGGATAAGAGGAAAGA 1307
Query 1297 TAAGTACCGAGCTTTAATAGAAGCCGAAGATGTTGATTCTGATAAAGACCTGGAGGAGGA 1356
|||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1308 TAAGTACCGAGCTTTAATTGAATCCGAAGATGTTGATTCTGATAAAGACGTGGAGGAGGA 1367
Query 1357 GAATGACCAGGATATGGAGGTAACATTCAATACCGGTTTAGAAGATCTTAGCAAAGAGAT 1416
| ||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1368 GGATGGCCAGGATATGGAGGTAACATTCAATACCGGGTTAGAAGATCTTAGTAAAGAGAT 1427
Query 1417 TCTTAAAAAGAAAGACAACCAGTCAGAATCGGTGTGGGAAACATATCTAAGGCAGAGACG 1476
||||||||||||||||| | |||||||||| ||||||||||||||| |||||||||||||
Sbjct 1428 TCTTAAAAAGAAAGACAGCAAGTCAGAATCAGTGTGGGAAACATATTTAAGGCAGAGACG 1487
Query 1477 CGAGAAGAAGAGAGCCAGGAAGAATAAACAGAAGGATGATGATTCTTCTCCGGATGATGA 1536
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1488 TGAGAAGAAGAGAGCCAGGAAGAATAAACAGAACGATGATTCTTCTTCTCCGGATGATGA 1547
Query 1537 CGACGATTATAACATTGATAGAAAGGCAGTGAAAGATGATGGAGATGACGATTTCTTTAT 1596
|| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1548 TGATGATTATAACATTGATCGAAAGGCAGTGAAAGATGATGGTGATGACGATTTCTTTAT 1607
Query 1597 GGAGGAACCTCCTCTTaagaagaagaagaaagaaggaaagac-aa-a-gaagg----ag- 1648
||| ||||||||||| ||||| |||||||||||||||||||| || | ||||| ||
Sbjct 1608 GGAAGAACCTCCTCTCAAGAAAAAGAAGAAAGAAGGAAAGACGAAGAAGAAGGGTTTAGA 1667
Query 1649 g-a--a-gtagcagcggaagaaaaaagtagaGCGGAGCTTGAGTTGTTACTAGCTGATGA 1704
| | | |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1668 GGAGGAAGTAGCAGCGGAAGAAAAAAGCAGAGCGGAGCTTGAGTTGTTACTAGCTGATGA 1727
Query 1705 GAATGCAGGAGATGGTAATGGTCTGAAAGGGTATAATATTAAACGGAAAGCTAAAAAAGG 1764
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1728 GAATGCAGGAGATGGTAATGGTCTGAAAGGGTATAATATTAAACGGAAAGGTAAAAAAGG 1787
Query 1765 AAAGACTGATATTTCGGAAGACAAGATACCTGCTGCTGAACTTGATGATCCGAGATTCTC 1824
||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1788 AAAAACTGATATTTCGGAAGAGAAGATACCTGCGGCTGATCTTGATGATCCGAGATTCTC 1847
Query 1825 AGCTCTATTCTCGTCTCCTTACTATGCCCTAGACCCTACGGATCCACAGTTTAAAAGGAG 1884
|||||||||||| ||||||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 1848 AGCTCTATTCTCATCTCCTTTCTATGCTCTAGACCCTACGGACCCACAGTTTAAAAGGAG 1907
Query 1885 TGCGACTTATGCAAGGCAATTAGCTTTGAAGCAAAAGGAAGATCCAAAAGGCCACGAGGA 1944
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1908 TGCGACTTATGCAAGGCAATTAGCTGCGAAGCAAAAGGAAGATCCAAAAAGCCACGAGGA 1967
Query 1945 TGTGAAAGCGCCAAAGGAGAAACAGGAGTTGAATTCAGATGGTAACTTGGGGTCTAAGAA 2004
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1968 TGTGAAAGCGCCAAAGGAGAAACATGAGTTGAATTCAGATGGTAACTTGGGGTCGAAGAA 2027
Query 2005 GGAGAGACACGAACTGACTTCTACTGTCAAATCTTTGAAGATGAAGATGATGAACAAGGA 2064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2028 GGAGAGACACGAACTGACTTCTACTGTCAAATCTTTGAAGATGAAGATGATGAACAAGGA 2087
Query 2065 TTCTGAGAAGAAAAAAGCGGGAAATCCAGCGTCTTCATCGACTTTGGCTCAGCGAATTAA 2124
||||||||||||||| ||||||||| ||| |||||| || ||||||||||||||||||||
Sbjct 2088 TTCTGAGAAGAAAAAGGCGGGAAATGCAGTGTCTTCGTCCACTTTGGCTCAGCGAATTAA 2147
Query 2125 GAAGAAAGCCAAAGATTTATCCAAGAAAT 2153
|||||||||||| |||||||| || ||||
Sbjct 2148 GAAGAAAGCCAAGGATTTATCAAACAAAT 2176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85436419535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5